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The map label for this gene is thf1

Identifier: 113474941

GI number: 113474941

Start: 1828262

End: 1828981

Strand: Direct

Name: thf1

Synonym: Tery_1168

Alternate gene names: 113474941

Gene position: 1828262-1828981 (Clockwise)

Preceding gene: 113474940

Following gene: 113474945

Centisome position: 23.59

GC content: 33.89

Gene sequence:

>720_bases
GTGAATAATACTCGTACTGTTTCAGATACTAAGAAAACCTTTTATCACTTTCACACCCGTCCCATTAATTCAATATATAA
TCGGGTAATTGAAGAGTTGTTAGTGGAAATGCACCTGATTTCCGTTAATGTTGATTATAGCTATAACCCATTTTATGCTT
TGGGTGTAGTTACAGCTTTTGACCGTTTTATGCAGGGATATTCTCCACAGGAGGATAAAACGTCGATTTTTAATGCTTTG
ATTCAAGGGCAAGAAGAGGATCCAAACAAATACCGTAGTGATGCTAAAGGTTTAGAAGATTTAGCTGGAAAAATCTCAGC
GTCTGATATACTTTCATGGATTTGTTTATCAAAAAATATAGATAATACTCAATATTTGCAAGATGATTTAAGAGCTATTT
CTGAGAATTCAAAATTTAGGTATAGTCGCCTATTTGCTATAGGTTTATTTACTTTACTGGAAATAGTAGATACAGAATTA
ATCAAGGAACAAGAGAAGCGTACAGAAGCACTTAAGAAAATTTGCCAATCTTTAAATTTGGTAGAAGAAAAGTTGTTAAA
AGATATAGATTTGTATCTTAGTAACTTGGAAAGAGTAGCTCAAGCTCGTAGTGCTATGGAAGATACCCTCGCAGCCATGA
GGAAAAAACGAGAAAAACGCAGCTTAGAAAAAGTAAATCTTTCTACTTCTGGGAACAAGACTTCAGAAGATAGTGAGTAA

Upstream 100 bases:

>100_bases
CACTCTGCTTTTCTAACTACTACTACTATAAACTTCAAAGGTTTTGTAGTAGATAAGAATATCAATATTCAGAGATGGGA
TTATAGAATTAGAACACCAG

Downstream 100 bases:

>100_bases
GAAAAACAAAGTGATAATCTACTCAGTTAATCTTTATTTTTGCTGATTTTTTATATATATTAAATAAATATTATATAATT
ATATAATTATATAATAGAGA

Product: Thf1-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MNNTRTVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQGYSPQEDKTSIFNAL
IQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQYLQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTEL
IKEQEKRTEALKKICQSLNLVEEKLLKDIDLYLSNLERVAQARSAMEDTLAAMRKKREKRSLEKVNLSTSGNKTSEDSE

Sequences:

>Translated_239_residues
MNNTRTVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQGYSPQEDKTSIFNAL
IQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQYLQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTEL
IKEQEKRTEALKKICQSLNLVEEKLLKDIDLYLSNLERVAQARSAMEDTLAAMRKKREKRSLEKVNLSTSGNKTSEDSE
>Mature_239_residues
MNNTRTVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQGYSPQEDKTSIFNAL
IQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQYLQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTEL
IKEQEKRTEALKKICQSLNLVEEKLLKDIDLYLSNLERVAQARSAMEDTLAAMRKKREKRSLEKVNLSTSGNKTSEDSE

Specific function: May be involved in photosynthetic membrane biogenesis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the THF1 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): THF1_TRIEI (Q116P5)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_721002.1
- STRING:   Q116P5
- GeneID:   4245751
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_1168
- NMPDR:   fig|203124.1.peg.3490
- eggNOG:   NOG08111
- HOGENOM:   HBG634536
- OMA:   RTVSDTK
- ProtClustDB:   PRK13266
- BioCyc:   TERY203124:TERY_1168-MONOMER
- HAMAP:   MF_01843
- InterPro:   IPR017499
- TIGRFAMs:   TIGR03060

Pfam domain/function: PF11264 ThylakoidFormat

EC number: NA

Molecular weight: Translated: 27544; Mature: 27544

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNTRTVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAF
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHH
DRFMQGYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNI
HHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
DNTQYLQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNL
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEEKLLKDIDLYLSNLERVAQARSAMEDTLAAMRKKREKRSLEKVNLSTSGNKTSEDSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MNNTRTVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAF
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHH
DRFMQGYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNI
HHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
DNTQYLQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNL
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEEKLLKDIDLYLSNLERVAQARSAMEDTLAAMRKKREKRSLEKVNLSTSGNKTSEDSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA