| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474905
Identifier: 113474905
GI number: 113474905
Start: 1786261
End: 1786851
Strand: Reverse
Name: 113474905
Synonym: Tery_1131
Alternate gene names: NA
Gene position: 1786851-1786261 (Counterclockwise)
Preceding gene: 113474906
Following gene: 113474904
Centisome position: 23.06
GC content: 33.67
Gene sequence:
>591_bases TTGGCAGCTCGCTATCTTGTTGAAAATGGCTTGAAGGAAATACTCCAGAAAGGAGAAATTAATTTTTGGTTATTCAGAAC AATAGCAATTTCAATTGGTATTTCTAAGGAACTTCATAAGATATTAGACCCTAAAGTTGCATCTAGAGACCCTGTATTAG CGACAGCAGTTGTAAATGGCCTTTCATTTGTCAGAGCTGATGACAAAAAGCTCCTGAGTGGGTTTATTCAAAGTTTTGTG GCACAACTCCTCAAGCGGAAAAATTTTGATTTATCCCATAAAGAATATGATCCTTGTAGTCCCTTAAGAGTTTTAAAATT CCTGAGTAGGTTATCTTCAAATGGCTATAGTAGCTTCTTTTTTCTCCCTCTTGGTTTGTTTAAAATGCTTCTTCAACGCA GGGATACAAGTATTGCAGATGCAGCAGCTATTACTCTTCTTACCTACGCATCTAGAACTAAATTTAACATTAATATTTGG ATAATTATGCTGCAATATTTGTTAAGAAATTCTGTTCGTTTTGAATTATATCTAAAAGTTTATAACGGTTTTTCTACAGC AATTTATAGAGGTTTAATTGGAGATGTATAA
Upstream 100 bases:
>100_bases TCCTAGTATTATGGATCTGGCAGAACAATATCGCCTAATAGAATTAGATGCCAATAATGATTATTTTTCTAGATTTTTTA ATTAAAGAGCTGCTGACTAT
Downstream 100 bases:
>100_bases TCAGCGATCGCTCACTAAAAATTCTTTTTGGAATTGGTTTTTTTGTATAACTTTACCTTTAGCTTTTGGATATACTTTAA CTACTTTTATTGCCCTAGTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 196; Mature: 195
Protein sequence:
>196_residues MAARYLVENGLKEILQKGEINFWLFRTIAISIGISKELHKILDPKVASRDPVLATAVVNGLSFVRADDKKLLSGFIQSFV AQLLKRKNFDLSHKEYDPCSPLRVLKFLSRLSSNGYSSFFFLPLGLFKMLLQRRDTSIADAAAITLLTYASRTKFNINIW IIMLQYLLRNSVRFELYLKVYNGFSTAIYRGLIGDV
Sequences:
>Translated_196_residues MAARYLVENGLKEILQKGEINFWLFRTIAISIGISKELHKILDPKVASRDPVLATAVVNGLSFVRADDKKLLSGFIQSFV AQLLKRKNFDLSHKEYDPCSPLRVLKFLSRLSSNGYSSFFFLPLGLFKMLLQRRDTSIADAAAITLLTYASRTKFNINIW IIMLQYLLRNSVRFELYLKVYNGFSTAIYRGLIGDV >Mature_195_residues AARYLVENGLKEILQKGEINFWLFRTIAISIGISKELHKILDPKVASRDPVLATAVVNGLSFVRADDKKLLSGFIQSFVA QLLKRKNFDLSHKEYDPCSPLRVLKFLSRLSSNGYSSFFFLPLGLFKMLLQRRDTSIADAAAITLLTYASRTKFNINIWI IMLQYLLRNSVRFELYLKVYNGFSTAIYRGLIGDV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22366; Mature: 22234
Theoretical pI: Translated: 10.45; Mature: 10.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAARYLVENGLKEILQKGEINFWLFRTIAISIGISKELHKILDPKVASRDPVLATAVVNG CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHH LSFVRADDKKLLSGFIQSFVAQLLKRKNFDLSHKEYDPCSPLRVLKFLSRLSSNGYSSFF HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHH FLPLGLFKMLLQRRDTSIADAAAITLLTYASRTKFNINIWIIMLQYLLRNSVRFELYLKV HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCHHEEEEEH YNGFSTAIYRGLIGDV HHCHHHHHHHHHHCCC >Mature Secondary Structure AARYLVENGLKEILQKGEINFWLFRTIAISIGISKELHKILDPKVASRDPVLATAVVNG CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHH LSFVRADDKKLLSGFIQSFVAQLLKRKNFDLSHKEYDPCSPLRVLKFLSRLSSNGYSSFF HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHH FLPLGLFKMLLQRRDTSIADAAAITLLTYASRTKFNINIWIIMLQYLLRNSVRFELYLKV HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCHHEEEEEH YNGFSTAIYRGLIGDV HHCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA