| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474823
Identifier: 113474823
GI number: 113474823
Start: 1627718
End: 1628632
Strand: Direct
Name: 113474823
Synonym: Tery_1039
Alternate gene names: NA
Gene position: 1627718-1628632 (Clockwise)
Preceding gene: 113474822
Following gene: 113474824
Centisome position: 21.0
GC content: 40.0
Gene sequence:
>915_bases GTGAACATTAAGGACAAATACTTACAAGCTAGCACTCTTTTCCTAACTTTGGTGACTGTAGGAGCTACCTCTGCAACTGC GGCTAGCTTAAAAAGTTCTGATGTGGTCGTCATAGTTGATGAATATGGTTCTATGAACTACGAGCAAACATGGCTTGGCA CGGTTATTCCACAGTTAGATACTGCTCTGCAAAATCAAGGTATCGTGGGCAACCGTTTTGGTCTTGTTGGATTTGGTACT TCCAATCAAACCTTAGGACGATCTTTGCCTTTAGGTGGAGCCAAGTTTGGTAACTCTGCTGAATTTGCAACTGCTACAAA TAGCTTACTATTAAAAGGTGGTTTTGAAGATGGTTATTCTGCAATTGACTTTGCTTTGAATAACTACACCTTCCGCGAAG GTGCTGCTGTTAACTTCATCCTGGTGACAGACGAAGATCGGGATAATGGTAACTCTAGCCTCAACTTCAACAATATCCTG GCCAGATTAAAGCGAAACCCTCAAGACAATAAAGATGATATTCTCTTGAATGCTATAGTCAATGCCAACTTTGTGAATAA TTCTCTTGGAGTTAACTCTGAAGGAAATGCCTATATTGCCAACGGTAGTGGTGGATATACAACTACTCAACTTCCACAAC CACTAACTAACTTTATTACCAGTGATTTTGGAACTACTAAATTAGACTATATAGATTTAGCTCTTGATAGTGGTGGCACA GGATGGGACTTGAACCAACTACGTGATGGTGGTCTAACTGGAACTTCTTTCGCGAAGGCATTTATTGATATCAAAGTTGA AGAGATTAAGAATCAACAGATACCCGAACCAGGTTTAGTTTTAGGTCTTTTGAGTGCGGGTGTTTTAGGTGTCATTTCAT TGGGTAAAAAGCTAACTCAGAGTGTCTTAAACTGA
Upstream 100 bases:
>100_bases GTCGACAACTGATAACTTTTTGATTTACCTATATTATACTCACCTATGATAATTACAATCTATCAAAGGCAAACGAGTAT ATATCAAAAGGATAGAACTA
Downstream 100 bases:
>100_bases AGCTGTAAGACTTAAGTCAGGCAAAGCAAAGCTTTTAACTTTTTAGGTATACCTGAGCAGGGCTGATAATTGCATTCACC TATTTAATCTATGAGTTAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 304; Mature: 304
Protein sequence:
>304_residues MNIKDKYLQASTLFLTLVTVGATSATAASLKSSDVVVIVDEYGSMNYEQTWLGTVIPQLDTALQNQGIVGNRFGLVGFGT SNQTLGRSLPLGGAKFGNSAEFATATNSLLLKGGFEDGYSAIDFALNNYTFREGAAVNFILVTDEDRDNGNSSLNFNNIL ARLKRNPQDNKDDILLNAIVNANFVNNSLGVNSEGNAYIANGSGGYTTTQLPQPLTNFITSDFGTTKLDYIDLALDSGGT GWDLNQLRDGGLTGTSFAKAFIDIKVEEIKNQQIPEPGLVLGLLSAGVLGVISLGKKLTQSVLN
Sequences:
>Translated_304_residues MNIKDKYLQASTLFLTLVTVGATSATAASLKSSDVVVIVDEYGSMNYEQTWLGTVIPQLDTALQNQGIVGNRFGLVGFGT SNQTLGRSLPLGGAKFGNSAEFATATNSLLLKGGFEDGYSAIDFALNNYTFREGAAVNFILVTDEDRDNGNSSLNFNNIL ARLKRNPQDNKDDILLNAIVNANFVNNSLGVNSEGNAYIANGSGGYTTTQLPQPLTNFITSDFGTTKLDYIDLALDSGGT GWDLNQLRDGGLTGTSFAKAFIDIKVEEIKNQQIPEPGLVLGLLSAGVLGVISLGKKLTQSVLN >Mature_304_residues MNIKDKYLQASTLFLTLVTVGATSATAASLKSSDVVVIVDEYGSMNYEQTWLGTVIPQLDTALQNQGIVGNRFGLVGFGT SNQTLGRSLPLGGAKFGNSAEFATATNSLLLKGGFEDGYSAIDFALNNYTFREGAAVNFILVTDEDRDNGNSSLNFNNIL ARLKRNPQDNKDDILLNAIVNANFVNNSLGVNSEGNAYIANGSGGYTTTQLPQPLTNFITSDFGTTKLDYIDLALDSGGT GWDLNQLRDGGLTGTSFAKAFIDIKVEEIKNQQIPEPGLVLGLLSAGVLGVISLGKKLTQSVLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32297; Mature: 32297
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIKDKYLQASTLFLTLVTVGATSATAASLKSSDVVVIVDEYGSMNYEQTWLGTVIPQLD CCCCHHHHHHHHHEEEHHHHCCCCHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH TALQNQGIVGNRFGLVGFGTSNQTLGRSLPLGGAKFGNSAEFATATNSLLLKGGFEDGYS HHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCH AIDFALNNYTFREGAAVNFILVTDEDRDNGNSSLNFNNILARLKRNPQDNKDDILLNAIV HHHHHCCCEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEE NANFVNNSLGVNSEGNAYIANGSGGYTTTQLPQPLTNFITSDFGTTKLDYIDLALDSGGT ECEEECCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEECCCCC GWDLNQLRDGGLTGTSFAKAFIDIKVEEIKNQQIPEPGLVLGLLSAGVLGVISLGKKLTQ CCCHHHHCCCCCCHHHHHHHHHEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH SVLN HHCC >Mature Secondary Structure MNIKDKYLQASTLFLTLVTVGATSATAASLKSSDVVVIVDEYGSMNYEQTWLGTVIPQLD CCCCHHHHHHHHHEEEHHHHCCCCHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH TALQNQGIVGNRFGLVGFGTSNQTLGRSLPLGGAKFGNSAEFATATNSLLLKGGFEDGYS HHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCH AIDFALNNYTFREGAAVNFILVTDEDRDNGNSSLNFNNILARLKRNPQDNKDDILLNAIV HHHHHCCCEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEE NANFVNNSLGVNSEGNAYIANGSGGYTTTQLPQPLTNFITSDFGTTKLDYIDLALDSGGT ECEEECCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEECCCCC GWDLNQLRDGGLTGTSFAKAFIDIKVEEIKNQQIPEPGLVLGLLSAGVLGVISLGKKLTQ CCCHHHHCCCCCCHHHHHHHHHEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH SVLN HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA