| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474822
Identifier: 113474822
GI number: 113474822
Start: 1625440
End: 1627242
Strand: Direct
Name: 113474822
Synonym: Tery_1038
Alternate gene names: NA
Gene position: 1625440-1627242 (Clockwise)
Preceding gene: 113474821
Following gene: 113474823
Centisome position: 20.97
GC content: 33.61
Gene sequence:
>1803_bases ATGACTGAAGCTAAAATATTAACCATCAGTCCAACAATTACAAGCCCAGCAATTCAATATAAAGTATCTATGCCTCATCC AGAATCTCATCTGTTTGAGGTTAGTTTGTCTGTAAGAGTTGAAGAATTATCTTCCTCATTATTACAAATGTCCAAAAAAC TGGATTTAAAAATGCCAGTATGGACACCAGGTTCTTACTTAATCAGGGAATATGCTAAACATTTGCAAGATTTCTGTGCC TATAGTGAAAATAAACAACCTTTACCTTGGCAAAAACTTAGCAAAAATCACTGGCAAATAGAAACATTGGGAGTCTCAAA AGTAATAGTTCAGTACAAGATATTTGCTAATGAATTAACAGTGCGCACCAATCATTTAGACTCTACACATGCTTATTTTA ACGGTGCAGCTTTGTTCTTTTATATTCCTGAATGTGAAAAAAATAAGATTAGGCTCGAAGTTATTTCACCATTACCTAAT TGGCAAATTACGACATCTTTACCAAAGACTCCAAATACAGAAAATACATTTGAAGCAGAAGATTTTGATACTTTAGTAGA TAGTCCTTTTGAGATAGGTAACCATCAATTATATCAATTTGAAGTAGAAGGAAAAAAACATCAATTAGCTATTTGGGGAA AAGGTAATGCAGAGCCAGAAAAATTAATTCCAGATATACAAAAAATTATTGCAGTAGAAGCAGAGTTTTTTGGTGGTTTG CCTTATGAAGAATATTTATTTATTTTGCATAGTTCTAGTAAAGGATTTGGTGGTTTAGAACATAAGTTTAGTTGTACCTT AAATTATCCGAGATTTGGTTTTAGGAATAAGGAAAAACGTGATCGGTTCATGCAGCTAGTTGCCCATGAATTTTTCCACT TGTGGAATGTTAAACGTATCCGACCTAAAGCATTAGAAGAGTTTGATTATGACCAAGAAAATTATACTCCTTCTCTGTGG TTTTCTGAAGGTACAACTAGTTATTATGACTTATTAATTCCTCTAAGAGCAGGTATTTATGATGTTCAAACTTTCTTGAA AGAATTAGGAAAAGAAATTACACTTCTGCTAACAACAATAGGAAGAAAAGTACAACCTGTAAGTGAGTCTAGTTGGGATG CTTGGATTAAATTATATCGTCGGGATAATAATAGTAACAACTGTCAAATTTCCTATTATTTAAAGGGAGCAATGATATCT TTATTACTTGATTTGTTAATTCGAGAAAAATATGAAAATCAACGCTCACTAGATGATGTAATGTATCAAATGTGGGAGAA ATTTGGTAAGTCAGAAATAGGTTTTACTCCAGAACAATTGAAAGCTGTAATTGAAGAGGTAGCAGAATTAGATTTGGGCA ACTTCTTTAAGAGATATATTGATGGTTTAGATGAGTTACCTTTTGATGAATACTTCGGGCATTTTGGCCTGCAACTTAAA AAAGAAGATAATGAATGGCCTGATTGGGGTATGAATGTTGTTAGTGAAAATAATAAAGAAATAATTAAGTTTGTAGAAAA TAACGGGCCAGCACAGTTGGCGGGAATAAATGCAGGAGATCAGTTACTGGCAATAAATGGTTTTCGGGTAAATGCAGATA AGTTGGGCTATCGCCTCAAAGATTATCAACCAGGAGATATTTTGGAAGTAACTGTTTTCCATCAAGATGAGCTTATTACT CATCAGATAACTTTGGCTCACCCCGGTCCTAGTCGTTACCAATTGGTTCCAGTGAAAAATCCTACGGCAACACAAGAAAA AAATTTTGTTGGGTGGTTGGGAAGTTCATTAGAGTCTATTTGA
Upstream 100 bases:
>100_bases TGATTAATATAGTATAAATGACAAGGCAAATATTTTGGGCTTCTTTCCTATCCTCTAGCCCATATTCTCCACTTTCTATT CACTTTAAAAATTAATAACT
Downstream 100 bases:
>100_bases TTGATAACTCAGATTTCTCTTGGTAAAGATAAATTCAAGATGATTTACACAGTATGAATAATTACCAAGCAATTGAATTT AACACTACTTTTAATTTTAC
Product: peptidase M61
Products: NA
Alternate protein names: Peptidase M; Protease; M61 Family Peptidase; M61 Glycyl Aminopeptidase; M61 Family Glycyl Aminopeptidase; Glycyl Aminopeptidase; Pdz/Dhr/Glgf; Trypsin-Like Serine Protease; Aminopeptidase N Family Protein; Metallopeptidase; PDZ Domain-Containing Protein; PDZ Domain Family Protein; Protease With C-Terminal PDZ Domain-Containing Protein; PDZ/DHR/GLGFPeptidase M; PDZ Domain Protein; Protease With C-Terminal PDZ Domain; Glycyl Aminopeptidase Protein; Aminopeptidase; Signaling Protein; M61 Glycyl Aminopeptidase Protein; M61 Glycyl Aminopeptidase Family Protein
Number of amino acids: Translated: 600; Mature: 599
Protein sequence:
>600_residues MTEAKILTISPTITSPAIQYKVSMPHPESHLFEVSLSVRVEELSSSLLQMSKKLDLKMPVWTPGSYLIREYAKHLQDFCA YSENKQPLPWQKLSKNHWQIETLGVSKVIVQYKIFANELTVRTNHLDSTHAYFNGAALFFYIPECEKNKIRLEVISPLPN WQITTSLPKTPNTENTFEAEDFDTLVDSPFEIGNHQLYQFEVEGKKHQLAIWGKGNAEPEKLIPDIQKIIAVEAEFFGGL PYEEYLFILHSSSKGFGGLEHKFSCTLNYPRFGFRNKEKRDRFMQLVAHEFFHLWNVKRIRPKALEEFDYDQENYTPSLW FSEGTTSYYDLLIPLRAGIYDVQTFLKELGKEITLLLTTIGRKVQPVSESSWDAWIKLYRRDNNSNNCQISYYLKGAMIS LLLDLLIREKYENQRSLDDVMYQMWEKFGKSEIGFTPEQLKAVIEEVAELDLGNFFKRYIDGLDELPFDEYFGHFGLQLK KEDNEWPDWGMNVVSENNKEIIKFVENNGPAQLAGINAGDQLLAINGFRVNADKLGYRLKDYQPGDILEVTVFHQDELIT HQITLAHPGPSRYQLVPVKNPTATQEKNFVGWLGSSLESI
Sequences:
>Translated_600_residues MTEAKILTISPTITSPAIQYKVSMPHPESHLFEVSLSVRVEELSSSLLQMSKKLDLKMPVWTPGSYLIREYAKHLQDFCA YSENKQPLPWQKLSKNHWQIETLGVSKVIVQYKIFANELTVRTNHLDSTHAYFNGAALFFYIPECEKNKIRLEVISPLPN WQITTSLPKTPNTENTFEAEDFDTLVDSPFEIGNHQLYQFEVEGKKHQLAIWGKGNAEPEKLIPDIQKIIAVEAEFFGGL PYEEYLFILHSSSKGFGGLEHKFSCTLNYPRFGFRNKEKRDRFMQLVAHEFFHLWNVKRIRPKALEEFDYDQENYTPSLW FSEGTTSYYDLLIPLRAGIYDVQTFLKELGKEITLLLTTIGRKVQPVSESSWDAWIKLYRRDNNSNNCQISYYLKGAMIS LLLDLLIREKYENQRSLDDVMYQMWEKFGKSEIGFTPEQLKAVIEEVAELDLGNFFKRYIDGLDELPFDEYFGHFGLQLK KEDNEWPDWGMNVVSENNKEIIKFVENNGPAQLAGINAGDQLLAINGFRVNADKLGYRLKDYQPGDILEVTVFHQDELIT HQITLAHPGPSRYQLVPVKNPTATQEKNFVGWLGSSLESI >Mature_599_residues TEAKILTISPTITSPAIQYKVSMPHPESHLFEVSLSVRVEELSSSLLQMSKKLDLKMPVWTPGSYLIREYAKHLQDFCAY SENKQPLPWQKLSKNHWQIETLGVSKVIVQYKIFANELTVRTNHLDSTHAYFNGAALFFYIPECEKNKIRLEVISPLPNW QITTSLPKTPNTENTFEAEDFDTLVDSPFEIGNHQLYQFEVEGKKHQLAIWGKGNAEPEKLIPDIQKIIAVEAEFFGGLP YEEYLFILHSSSKGFGGLEHKFSCTLNYPRFGFRNKEKRDRFMQLVAHEFFHLWNVKRIRPKALEEFDYDQENYTPSLWF SEGTTSYYDLLIPLRAGIYDVQTFLKELGKEITLLLTTIGRKVQPVSESSWDAWIKLYRRDNNSNNCQISYYLKGAMISL LLDLLIREKYENQRSLDDVMYQMWEKFGKSEIGFTPEQLKAVIEEVAELDLGNFFKRYIDGLDELPFDEYFGHFGLQLKK EDNEWPDWGMNVVSENNKEIIKFVENNGPAQLAGINAGDQLLAINGFRVNADKLGYRLKDYQPGDILEVTVFHQDELITH QITLAHPGPSRYQLVPVKNPTATQEKNFVGWLGSSLESI
Specific function: Unknown
COG id: COG3975
COG function: function code R; Predicted protease with the C-terminal PDZ domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69380; Mature: 69248
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: PS50106 PDZ ; PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEAKILTISPTITSPAIQYKVSMPHPESHLFEVSLSVRVEELSSSLLQMSKKLDLKMPV CCCCEEEEECCCCCCCEEEEEEECCCCCCCEEEEEEEEEHHHHHHHHHHHHHHCCCCCCC WTPGSYLIREYAKHLQDFCAYSENKQPLPWQKLSKNHWQIETLGVSKVIVQYKIFANELT CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEECHHHEEHEEEEECCEEE VRTNHLDSTHAYFNGAALFFYIPECEKNKIRLEVISPLPNWQITTSLPKTPNTENTFEAE EEECCCCCCCCEECCEEEEEECCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCC DFDTLVDSPFEIGNHQLYQFEVEGKKHQLAIWGKGNAEPEKLIPDIQKIIAVEAEFFGGL HHHHHHCCCHHCCCCEEEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC PYEEYLFILHSSSKGFGGLEHKFSCTLNYPRFGFRNKEKRDRFMQLVAHEFFHLWNVKRI CHHHEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC RPKALEEFDYDQENYTPSLWFSEGTTSYYDLLIPLRAGIYDVQTFLKELGKEITLLLTTI CHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH GRKVQPVSESSWDAWIKLYRRDNNSNNCQISYYLKGAMISLLLDLLIREKYENQRSLDDV CCCCCCCCCCCHHHHHEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHH MYQMWEKFGKSEIGFTPEQLKAVIEEVAELDLGNFFKRYIDGLDELPFDEYFGHFGLQLK HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHCCCHHHHHCCCCEEEE KEDNEWPDWGMNVVSENNKEIIKFVENNGPAQLAGINAGDQLLAINGFRVNADKLGYRLK CCCCCCCCCCCHHHCCCCCEEEHEECCCCCEEEEECCCCCEEEEEECEEECHHHHCCEEC DYQPGDILEVTVFHQDELITHQITLAHPGPSRYQLVPVKNPTATQEKNFVGWLGSSLESI CCCCCCEEEEEEEECCCEEEEEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure TEAKILTISPTITSPAIQYKVSMPHPESHLFEVSLSVRVEELSSSLLQMSKKLDLKMPV CCCEEEEECCCCCCCEEEEEEECCCCCCCEEEEEEEEEHHHHHHHHHHHHHHCCCCCCC WTPGSYLIREYAKHLQDFCAYSENKQPLPWQKLSKNHWQIETLGVSKVIVQYKIFANELT CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEECHHHEEHEEEEECCEEE VRTNHLDSTHAYFNGAALFFYIPECEKNKIRLEVISPLPNWQITTSLPKTPNTENTFEAE EEECCCCCCCCEECCEEEEEECCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCC DFDTLVDSPFEIGNHQLYQFEVEGKKHQLAIWGKGNAEPEKLIPDIQKIIAVEAEFFGGL HHHHHHCCCHHCCCCEEEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC PYEEYLFILHSSSKGFGGLEHKFSCTLNYPRFGFRNKEKRDRFMQLVAHEFFHLWNVKRI CHHHEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC RPKALEEFDYDQENYTPSLWFSEGTTSYYDLLIPLRAGIYDVQTFLKELGKEITLLLTTI CHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH GRKVQPVSESSWDAWIKLYRRDNNSNNCQISYYLKGAMISLLLDLLIREKYENQRSLDDV CCCCCCCCCCCHHHHHEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHH MYQMWEKFGKSEIGFTPEQLKAVIEEVAELDLGNFFKRYIDGLDELPFDEYFGHFGLQLK HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHCCCHHHHHCCCCEEEE KEDNEWPDWGMNVVSENNKEIIKFVENNGPAQLAGINAGDQLLAINGFRVNADKLGYRLK CCCCCCCCCCCHHHCCCCCEEEHEECCCCCEEEEECCCCCEEEEEECEEECHHHHCCEEC DYQPGDILEVTVFHQDELITHQITLAHPGPSRYQLVPVKNPTATQEKNFVGWLGSSLESI CCCCCCEEEEEEEECCCEEEEEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA