Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113474822

Identifier: 113474822

GI number: 113474822

Start: 1625440

End: 1627242

Strand: Direct

Name: 113474822

Synonym: Tery_1038

Alternate gene names: NA

Gene position: 1625440-1627242 (Clockwise)

Preceding gene: 113474821

Following gene: 113474823

Centisome position: 20.97

GC content: 33.61

Gene sequence:

>1803_bases
ATGACTGAAGCTAAAATATTAACCATCAGTCCAACAATTACAAGCCCAGCAATTCAATATAAAGTATCTATGCCTCATCC
AGAATCTCATCTGTTTGAGGTTAGTTTGTCTGTAAGAGTTGAAGAATTATCTTCCTCATTATTACAAATGTCCAAAAAAC
TGGATTTAAAAATGCCAGTATGGACACCAGGTTCTTACTTAATCAGGGAATATGCTAAACATTTGCAAGATTTCTGTGCC
TATAGTGAAAATAAACAACCTTTACCTTGGCAAAAACTTAGCAAAAATCACTGGCAAATAGAAACATTGGGAGTCTCAAA
AGTAATAGTTCAGTACAAGATATTTGCTAATGAATTAACAGTGCGCACCAATCATTTAGACTCTACACATGCTTATTTTA
ACGGTGCAGCTTTGTTCTTTTATATTCCTGAATGTGAAAAAAATAAGATTAGGCTCGAAGTTATTTCACCATTACCTAAT
TGGCAAATTACGACATCTTTACCAAAGACTCCAAATACAGAAAATACATTTGAAGCAGAAGATTTTGATACTTTAGTAGA
TAGTCCTTTTGAGATAGGTAACCATCAATTATATCAATTTGAAGTAGAAGGAAAAAAACATCAATTAGCTATTTGGGGAA
AAGGTAATGCAGAGCCAGAAAAATTAATTCCAGATATACAAAAAATTATTGCAGTAGAAGCAGAGTTTTTTGGTGGTTTG
CCTTATGAAGAATATTTATTTATTTTGCATAGTTCTAGTAAAGGATTTGGTGGTTTAGAACATAAGTTTAGTTGTACCTT
AAATTATCCGAGATTTGGTTTTAGGAATAAGGAAAAACGTGATCGGTTCATGCAGCTAGTTGCCCATGAATTTTTCCACT
TGTGGAATGTTAAACGTATCCGACCTAAAGCATTAGAAGAGTTTGATTATGACCAAGAAAATTATACTCCTTCTCTGTGG
TTTTCTGAAGGTACAACTAGTTATTATGACTTATTAATTCCTCTAAGAGCAGGTATTTATGATGTTCAAACTTTCTTGAA
AGAATTAGGAAAAGAAATTACACTTCTGCTAACAACAATAGGAAGAAAAGTACAACCTGTAAGTGAGTCTAGTTGGGATG
CTTGGATTAAATTATATCGTCGGGATAATAATAGTAACAACTGTCAAATTTCCTATTATTTAAAGGGAGCAATGATATCT
TTATTACTTGATTTGTTAATTCGAGAAAAATATGAAAATCAACGCTCACTAGATGATGTAATGTATCAAATGTGGGAGAA
ATTTGGTAAGTCAGAAATAGGTTTTACTCCAGAACAATTGAAAGCTGTAATTGAAGAGGTAGCAGAATTAGATTTGGGCA
ACTTCTTTAAGAGATATATTGATGGTTTAGATGAGTTACCTTTTGATGAATACTTCGGGCATTTTGGCCTGCAACTTAAA
AAAGAAGATAATGAATGGCCTGATTGGGGTATGAATGTTGTTAGTGAAAATAATAAAGAAATAATTAAGTTTGTAGAAAA
TAACGGGCCAGCACAGTTGGCGGGAATAAATGCAGGAGATCAGTTACTGGCAATAAATGGTTTTCGGGTAAATGCAGATA
AGTTGGGCTATCGCCTCAAAGATTATCAACCAGGAGATATTTTGGAAGTAACTGTTTTCCATCAAGATGAGCTTATTACT
CATCAGATAACTTTGGCTCACCCCGGTCCTAGTCGTTACCAATTGGTTCCAGTGAAAAATCCTACGGCAACACAAGAAAA
AAATTTTGTTGGGTGGTTGGGAAGTTCATTAGAGTCTATTTGA

Upstream 100 bases:

>100_bases
TGATTAATATAGTATAAATGACAAGGCAAATATTTTGGGCTTCTTTCCTATCCTCTAGCCCATATTCTCCACTTTCTATT
CACTTTAAAAATTAATAACT

Downstream 100 bases:

>100_bases
TTGATAACTCAGATTTCTCTTGGTAAAGATAAATTCAAGATGATTTACACAGTATGAATAATTACCAAGCAATTGAATTT
AACACTACTTTTAATTTTAC

Product: peptidase M61

Products: NA

Alternate protein names: Peptidase M; Protease; M61 Family Peptidase; M61 Glycyl Aminopeptidase; M61 Family Glycyl Aminopeptidase; Glycyl Aminopeptidase; Pdz/Dhr/Glgf; Trypsin-Like Serine Protease; Aminopeptidase N Family Protein; Metallopeptidase; PDZ Domain-Containing Protein; PDZ Domain Family Protein; Protease With C-Terminal PDZ Domain-Containing Protein; PDZ/DHR/GLGFPeptidase M; PDZ Domain Protein; Protease With C-Terminal PDZ Domain; Glycyl Aminopeptidase Protein; Aminopeptidase; Signaling Protein; M61 Glycyl Aminopeptidase Protein; M61 Glycyl Aminopeptidase Family Protein

Number of amino acids: Translated: 600; Mature: 599

Protein sequence:

>600_residues
MTEAKILTISPTITSPAIQYKVSMPHPESHLFEVSLSVRVEELSSSLLQMSKKLDLKMPVWTPGSYLIREYAKHLQDFCA
YSENKQPLPWQKLSKNHWQIETLGVSKVIVQYKIFANELTVRTNHLDSTHAYFNGAALFFYIPECEKNKIRLEVISPLPN
WQITTSLPKTPNTENTFEAEDFDTLVDSPFEIGNHQLYQFEVEGKKHQLAIWGKGNAEPEKLIPDIQKIIAVEAEFFGGL
PYEEYLFILHSSSKGFGGLEHKFSCTLNYPRFGFRNKEKRDRFMQLVAHEFFHLWNVKRIRPKALEEFDYDQENYTPSLW
FSEGTTSYYDLLIPLRAGIYDVQTFLKELGKEITLLLTTIGRKVQPVSESSWDAWIKLYRRDNNSNNCQISYYLKGAMIS
LLLDLLIREKYENQRSLDDVMYQMWEKFGKSEIGFTPEQLKAVIEEVAELDLGNFFKRYIDGLDELPFDEYFGHFGLQLK
KEDNEWPDWGMNVVSENNKEIIKFVENNGPAQLAGINAGDQLLAINGFRVNADKLGYRLKDYQPGDILEVTVFHQDELIT
HQITLAHPGPSRYQLVPVKNPTATQEKNFVGWLGSSLESI

Sequences:

>Translated_600_residues
MTEAKILTISPTITSPAIQYKVSMPHPESHLFEVSLSVRVEELSSSLLQMSKKLDLKMPVWTPGSYLIREYAKHLQDFCA
YSENKQPLPWQKLSKNHWQIETLGVSKVIVQYKIFANELTVRTNHLDSTHAYFNGAALFFYIPECEKNKIRLEVISPLPN
WQITTSLPKTPNTENTFEAEDFDTLVDSPFEIGNHQLYQFEVEGKKHQLAIWGKGNAEPEKLIPDIQKIIAVEAEFFGGL
PYEEYLFILHSSSKGFGGLEHKFSCTLNYPRFGFRNKEKRDRFMQLVAHEFFHLWNVKRIRPKALEEFDYDQENYTPSLW
FSEGTTSYYDLLIPLRAGIYDVQTFLKELGKEITLLLTTIGRKVQPVSESSWDAWIKLYRRDNNSNNCQISYYLKGAMIS
LLLDLLIREKYENQRSLDDVMYQMWEKFGKSEIGFTPEQLKAVIEEVAELDLGNFFKRYIDGLDELPFDEYFGHFGLQLK
KEDNEWPDWGMNVVSENNKEIIKFVENNGPAQLAGINAGDQLLAINGFRVNADKLGYRLKDYQPGDILEVTVFHQDELIT
HQITLAHPGPSRYQLVPVKNPTATQEKNFVGWLGSSLESI
>Mature_599_residues
TEAKILTISPTITSPAIQYKVSMPHPESHLFEVSLSVRVEELSSSLLQMSKKLDLKMPVWTPGSYLIREYAKHLQDFCAY
SENKQPLPWQKLSKNHWQIETLGVSKVIVQYKIFANELTVRTNHLDSTHAYFNGAALFFYIPECEKNKIRLEVISPLPNW
QITTSLPKTPNTENTFEAEDFDTLVDSPFEIGNHQLYQFEVEGKKHQLAIWGKGNAEPEKLIPDIQKIIAVEAEFFGGLP
YEEYLFILHSSSKGFGGLEHKFSCTLNYPRFGFRNKEKRDRFMQLVAHEFFHLWNVKRIRPKALEEFDYDQENYTPSLWF
SEGTTSYYDLLIPLRAGIYDVQTFLKELGKEITLLLTTIGRKVQPVSESSWDAWIKLYRRDNNSNNCQISYYLKGAMISL
LLDLLIREKYENQRSLDDVMYQMWEKFGKSEIGFTPEQLKAVIEEVAELDLGNFFKRYIDGLDELPFDEYFGHFGLQLKK
EDNEWPDWGMNVVSENNKEIIKFVENNGPAQLAGINAGDQLLAINGFRVNADKLGYRLKDYQPGDILEVTVFHQDELITH
QITLAHPGPSRYQLVPVKNPTATQEKNFVGWLGSSLESI

Specific function: Unknown

COG id: COG3975

COG function: function code R; Predicted protease with the C-terminal PDZ domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 69380; Mature: 69248

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS50106 PDZ ; PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEAKILTISPTITSPAIQYKVSMPHPESHLFEVSLSVRVEELSSSLLQMSKKLDLKMPV
CCCCEEEEECCCCCCCEEEEEEECCCCCCCEEEEEEEEEHHHHHHHHHHHHHHCCCCCCC
WTPGSYLIREYAKHLQDFCAYSENKQPLPWQKLSKNHWQIETLGVSKVIVQYKIFANELT
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEECHHHEEHEEEEECCEEE
VRTNHLDSTHAYFNGAALFFYIPECEKNKIRLEVISPLPNWQITTSLPKTPNTENTFEAE
EEECCCCCCCCEECCEEEEEECCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCC
DFDTLVDSPFEIGNHQLYQFEVEGKKHQLAIWGKGNAEPEKLIPDIQKIIAVEAEFFGGL
HHHHHHCCCHHCCCCEEEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
PYEEYLFILHSSSKGFGGLEHKFSCTLNYPRFGFRNKEKRDRFMQLVAHEFFHLWNVKRI
CHHHEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
RPKALEEFDYDQENYTPSLWFSEGTTSYYDLLIPLRAGIYDVQTFLKELGKEITLLLTTI
CHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
GRKVQPVSESSWDAWIKLYRRDNNSNNCQISYYLKGAMISLLLDLLIREKYENQRSLDDV
CCCCCCCCCCCHHHHHEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHH
MYQMWEKFGKSEIGFTPEQLKAVIEEVAELDLGNFFKRYIDGLDELPFDEYFGHFGLQLK
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHCCCHHHHHCCCCEEEE
KEDNEWPDWGMNVVSENNKEIIKFVENNGPAQLAGINAGDQLLAINGFRVNADKLGYRLK
CCCCCCCCCCCHHHCCCCCEEEHEECCCCCEEEEECCCCCEEEEEECEEECHHHHCCEEC
DYQPGDILEVTVFHQDELITHQITLAHPGPSRYQLVPVKNPTATQEKNFVGWLGSSLESI
CCCCCCEEEEEEEECCCEEEEEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
TEAKILTISPTITSPAIQYKVSMPHPESHLFEVSLSVRVEELSSSLLQMSKKLDLKMPV
CCCEEEEECCCCCCCEEEEEEECCCCCCCEEEEEEEEEHHHHHHHHHHHHHHCCCCCCC
WTPGSYLIREYAKHLQDFCAYSENKQPLPWQKLSKNHWQIETLGVSKVIVQYKIFANELT
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEECHHHEEHEEEEECCEEE
VRTNHLDSTHAYFNGAALFFYIPECEKNKIRLEVISPLPNWQITTSLPKTPNTENTFEAE
EEECCCCCCCCEECCEEEEEECCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCC
DFDTLVDSPFEIGNHQLYQFEVEGKKHQLAIWGKGNAEPEKLIPDIQKIIAVEAEFFGGL
HHHHHHCCCHHCCCCEEEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
PYEEYLFILHSSSKGFGGLEHKFSCTLNYPRFGFRNKEKRDRFMQLVAHEFFHLWNVKRI
CHHHEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
RPKALEEFDYDQENYTPSLWFSEGTTSYYDLLIPLRAGIYDVQTFLKELGKEITLLLTTI
CHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
GRKVQPVSESSWDAWIKLYRRDNNSNNCQISYYLKGAMISLLLDLLIREKYENQRSLDDV
CCCCCCCCCCCHHHHHEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHH
MYQMWEKFGKSEIGFTPEQLKAVIEEVAELDLGNFFKRYIDGLDELPFDEYFGHFGLQLK
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHCCCHHHHHCCCCEEEE
KEDNEWPDWGMNVVSENNKEIIKFVENNGPAQLAGINAGDQLLAINGFRVNADKLGYRLK
CCCCCCCCCCCHHHCCCCCEEEHEECCCCCEEEEECCCCCEEEEEECEEECHHHHCCEEC
DYQPGDILEVTVFHQDELITHQITLAHPGPSRYQLVPVKNPTATQEKNFVGWLGSSLESI
CCCCCCEEEEEEEECCCEEEEEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA