| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474755
Identifier: 113474755
GI number: 113474755
Start: 1502663
End: 1503307
Strand: Reverse
Name: 113474755
Synonym: Tery_0953
Alternate gene names: NA
Gene position: 1503307-1502663 (Counterclockwise)
Preceding gene: 113474756
Following gene: 113474750
Centisome position: 19.4
GC content: 33.02
Gene sequence:
>645_bases ATGAGTCAATCTGACCAAAATAAAGTATTACGAATGCTTCCTATAATAGCAGGAGGATTAGGTGCAACTTTACTTATGAC TAATAGATTTTTCACCCCTAATCTTTTAGCTTCCCAAACTCGTTCTGATGTAGTAGGAGTAATTTTAAGTGCTTTTTTAA TTTTGACTGGTTTACTTTGGCAACAAATACAACCACGCTCTCCTGATACTGTCAAATTAATTGGTAAATCAGAATTTGAA TTATTGCCAGAATTATCAGAGATAGTCAAAACTGAACTAGCTTGGGCTTCTAGTTTACTACTAACTAATACAGTTACTAA GACTGTTATTATCTGGCATCAAGAGAAGGTCTTATTAAGAAGAGGAATTTTACCATCTGAATCATACATCAAGCCAGGAA CTATTTTAAAGCAAGTTTTGGGTAAGCAAAAACCTATTTATTTAGTAGATTTAAAAGTTTATCCAGGTCGCATTGAGTTT AATTATTTGCCAGAAAATACCCAAGGTGTAATTTGTCAACCTCTTGGCAATAATGGTGTAATGATCTTGGGTGCAAATGC ACCTCGCAGTTACACTAAACAAGATGAAAATTGGATTTCAGGAATAGCAGATAAATTAACAGATACCTTATCAAAAAAAT TATAG
Upstream 100 bases:
>100_bases CAAAGGTTAACTAATTATTAGTAACTAGAAACTAGGGTTTTGATTATCTAATAACTGACAACTAATAGCTGTAAAGACGT TCTTTTGTCTTCCTTAAAAT
Downstream 100 bases:
>100_bases TACAGTGCTGTGTTTAGAGAGATTTAACTAACCTTTTTTGTACTGTTACTCAATTAAGTCCTAACATTATCACAATTTAT TTTACTGTTTTTACTGTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 214; Mature: 213
Protein sequence:
>214_residues MSQSDQNKVLRMLPIIAGGLGATLLMTNRFFTPNLLASQTRSDVVGVILSAFLILTGLLWQQIQPRSPDTVKLIGKSEFE LLPELSEIVKTELAWASSLLLTNTVTKTVIIWHQEKVLLRRGILPSESYIKPGTILKQVLGKQKPIYLVDLKVYPGRIEF NYLPENTQGVICQPLGNNGVMILGANAPRSYTKQDENWISGIADKLTDTLSKKL
Sequences:
>Translated_214_residues MSQSDQNKVLRMLPIIAGGLGATLLMTNRFFTPNLLASQTRSDVVGVILSAFLILTGLLWQQIQPRSPDTVKLIGKSEFE LLPELSEIVKTELAWASSLLLTNTVTKTVIIWHQEKVLLRRGILPSESYIKPGTILKQVLGKQKPIYLVDLKVYPGRIEF NYLPENTQGVICQPLGNNGVMILGANAPRSYTKQDENWISGIADKLTDTLSKKL >Mature_213_residues SQSDQNKVLRMLPIIAGGLGATLLMTNRFFTPNLLASQTRSDVVGVILSAFLILTGLLWQQIQPRSPDTVKLIGKSEFEL LPELSEIVKTELAWASSLLLTNTVTKTVIIWHQEKVLLRRGILPSESYIKPGTILKQVLGKQKPIYLVDLKVYPGRIEFN YLPENTQGVICQPLGNNGVMILGANAPRSYTKQDENWISGIADKLTDTLSKKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23771; Mature: 23640
Theoretical pI: Translated: 9.97; Mature: 9.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQSDQNKVLRMLPIIAGGLGATLLMTNRFFTPNLLASQTRSDVVGVILSAFLILTGLLW CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QQIQPRSPDTVKLIGKSEFELLPELSEIVKTELAWASSLLLTNTVTKTVIIWHQEKVLLR HHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHH RGILPSESYIKPGTILKQVLGKQKPIYLVDLKVYPGRIEFNYLPENTQGVICQPLGNNGV HCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCEEEEEECCCCCCCEEEEEECCCCE MILGANAPRSYTKQDENWISGIADKLTDTLSKKL EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SQSDQNKVLRMLPIIAGGLGATLLMTNRFFTPNLLASQTRSDVVGVILSAFLILTGLLW CCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QQIQPRSPDTVKLIGKSEFELLPELSEIVKTELAWASSLLLTNTVTKTVIIWHQEKVLLR HHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHH RGILPSESYIKPGTILKQVLGKQKPIYLVDLKVYPGRIEFNYLPENTQGVICQPLGNNGV HCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCEEEEEECCCCCCCEEEEEECCCCE MILGANAPRSYTKQDENWISGIADKLTDTLSKKL EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA