Click here to switch to the map view.

The map label for this gene is ureF

Identifier: 113474592

GI number: 113474592

Start: 1209008

End: 1209706

Strand: Direct

Name: ureF

Synonym: Tery_0751

Alternate gene names: 113474592

Gene position: 1209008-1209706 (Clockwise)

Preceding gene: 113474591

Following gene: 113474593

Centisome position: 15.6

GC content: 36.48

Gene sequence:

>699_bases
ATGATTAATTCTGACATATCCGAACAACTTGCCTTAATGCAGTTATCTGATTCTTTTTTTCCAACTGGTTCTTTTACTTT
TTCTCACGGACTAGAGACCTTGGTTCAAACTGGAAAAATTCAGTCGCAGCCAGAAATTTTGTATTTCTTGCAGATATTAT
TACGGAACAAAGTTGGAGTTAGTGATGTGGTAGCATTAATTCACAGTTATCGTGGTTGTAAGAACGGAGATATAGAAGCA
GTGAGAGTTGCAGATAGGATGTTATTTGTTCAAACAGCGATCGCTAAAAATAGAGAAACTCAGCGTCAAAGTGGACGAGC
TTTACTAATGGTAGCTAGTTCTACTTGGCAAGATGAACGATTAAAAACTCTTAATATAGATGCTGTTAGCGGGAATATAC
ACTGTTTACACCCAGTTATTTTTGGTGCAGTTACTTCGGTAGTAGGTTTAGACGAACGAAACGCAGTGTTAGCTTTTTTG
CATGGTTTAGTGACTAATATATTGGGGGCAGCTATTCGTTTAGGTATTTTAGGACATATACAAGCACAGCAAATTTTACT
CCAATTAGTACCAGACATTGAAGCGGTTTGGTCAACTGCTGTATCAATGAATCTAGAGCAAATGTGGTCTTGTACTCCTT
TTATTGATATTGCTCAAATGCAACATCCTAAATTGGCTCATAAATTATTTGCTAATTAA

Upstream 100 bases:

>100_bases
CTACTATTGCTAAATTTCAAATTCCTGGTTTGAAAATAGATTATGAATTGCGATCTCCCCAAGAACATTTCCAATTTTCC
CAGCATAGTCATCATAGCTA

Downstream 100 bases:

>100_bases
GGCATGAAAATTAAATAAGATCCAAAAATAAACATAGTAATGATAGGCTAATTGTTATAAATTCCTTTAAGCAAACTAAT
TCTCCTTTAGCTTGAGTTAT

Product: urease accessory protein UreF

Products: CO2; NH3

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MINSDISEQLALMQLSDSFFPTGSFTFSHGLETLVQTGKIQSQPEILYFLQILLRNKVGVSDVVALIHSYRGCKNGDIEA
VRVADRMLFVQTAIAKNRETQRQSGRALLMVASSTWQDERLKTLNIDAVSGNIHCLHPVIFGAVTSVVGLDERNAVLAFL
HGLVTNILGAAIRLGILGHIQAQQILLQLVPDIEAVWSTAVSMNLEQMWSCTPFIDIAQMQHPKLAHKLFAN

Sequences:

>Translated_232_residues
MINSDISEQLALMQLSDSFFPTGSFTFSHGLETLVQTGKIQSQPEILYFLQILLRNKVGVSDVVALIHSYRGCKNGDIEA
VRVADRMLFVQTAIAKNRETQRQSGRALLMVASSTWQDERLKTLNIDAVSGNIHCLHPVIFGAVTSVVGLDERNAVLAFL
HGLVTNILGAAIRLGILGHIQAQQILLQLVPDIEAVWSTAVSMNLEQMWSCTPFIDIAQMQHPKLAHKLFAN
>Mature_232_residues
MINSDISEQLALMQLSDSFFPTGSFTFSHGLETLVQTGKIQSQPEILYFLQILLRNKVGVSDVVALIHSYRGCKNGDIEA
VRVADRMLFVQTAIAKNRETQRQSGRALLMVASSTWQDERLKTLNIDAVSGNIHCLHPVIFGAVTSVVGLDERNAVLAFL
HGLVTNILGAAIRLGILGHIQAQQILLQLVPDIEAVWSTAVSMNLEQMWSCTPFIDIAQMQHPKLAHKLFAN

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0830

COG function: function code O; Urease accessory protein UreF

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureF family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UREF_TRIEI (Q117Z4)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_720653.1
- STRING:   Q117Z4
- GeneID:   4242483
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_0751
- NMPDR:   fig|203124.1.peg.711
- eggNOG:   COG0830
- HOGENOM:   HBG709295
- OMA:   FIRYETH
- ProtClustDB:   CLSK2398290
- BioCyc:   TERY203124:TERY_0751-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01385
- InterPro:   IPR002639
- PIRSF:   PIRSF009467

Pfam domain/function: PF01730 UreF

EC number: 3.5.1.5

Molecular weight: Translated: 25603; Mature: 25603

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINSDISEQLALMQLSDSFFPTGSFTFSHGLETLVQTGKIQSQPEILYFLQILLRNKVGV
CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCH
SDVVALIHSYRGCKNGDIEAVRVADRMLFVQTAIAKNRETQRQSGRALLMVASSTWQDER
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEEEEEECCCCCCCC
LKTLNIDAVSGNIHCLHPVIFGAVTSVVGLDERNAVLAFLHGLVTNILGAAIRLGILGHI
CEEEEEEEECCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAQQILLQLVPDIEAVWSTAVSMNLEQMWSCTPFIDIAQMQHPKLAHKLFAN
HHHHHHHHHHCCHHHHHHHHHHCCHHHHHCCCCHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure
MINSDISEQLALMQLSDSFFPTGSFTFSHGLETLVQTGKIQSQPEILYFLQILLRNKVGV
CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCH
SDVVALIHSYRGCKNGDIEAVRVADRMLFVQTAIAKNRETQRQSGRALLMVASSTWQDER
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEEEEEECCCCCCCC
LKTLNIDAVSGNIHCLHPVIFGAVTSVVGLDERNAVLAFLHGLVTNILGAAIRLGILGHI
CEEEEEEEECCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAQQILLQLVPDIEAVWSTAVSMNLEQMWSCTPFIDIAQMQHPKLAHKLFAN
HHHHHHHHHHCCHHHHHHHHHHCCHHHHHCCCCHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: urea; H2O

Specific reaction: urea + H2O = CO2 + 2 NH3

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA