Click here to switch to the map view.

The map label for this gene is rsmB [H]

Identifier: 113474586

GI number: 113474586

Start: 1203288

End: 1204619

Strand: Direct

Name: rsmB [H]

Synonym: Tery_0744

Alternate gene names: 113474586

Gene position: 1203288-1204619 (Clockwise)

Preceding gene: 113474583

Following gene: 113474587

Centisome position: 15.53

GC content: 33.63

Gene sequence:

>1332_bases
GTGAATAATAATCCTCGTCAACTAGCTTTTATTATCCTCCAAGAAATATATCGAAAACAAGTTTTTACTGATGTTGCTCT
AGATAGACATCTGAAAAAAAATGACTTAATAGATGCTAACCGCAGATTAGTTACAGAATTAGTTTATGGTTGTGTGAGAA
GGCAGCGATCGCTTGATGCTATTATCGACCAATTAGCAAAAAAGAAATCTCCCCAACAACACCCATATTTACGGATAATT
CTCCATATTGGTTTATATCAATTATCTTATTTAGAACAAATTCCAGAATCAGCAGCAGTTGATACAACAGTTGAGCTAGC
TAAACAAAATAAATTTGCTAAATTAGCTGGTTTTGTTAATGGTTTACTCCGAGAATATATTCGGCAGAACTTAACTATAA
ATCTCCCAGAAAATCCTGTTCAAAAATTAGGAATATCTTATAGTTTTCCTAACTGGATAGTTAAATATTGGATAGAAGAA
TTAGGTTTAACTGAAGCTGAAAAATTATGCTATTGGTTCAATCTATCCCCTAGTATTGATTTAAGAATTAATCCACTCAA
AACTTCTGTTGAAGAAGTAGAAATAGCTATGAAAAATATAGGTATTTCTGTTAGTAGAATTTTGCAAGTTCCCCAAGCTT
TAAGATTAAATGGGGCAGTGGGGCAAATTCAAAAATTACCTGGTTATAATGAAGGTTGGTGGTCAATTCAAGATAGTAGC
GCTCAGTTAGTTTGTTATTTATTAAATCCTCAACCAGGAGAAATAATAATTGATGCTTGTGCTGCACCTGGAGGTAAGAC
AACTCATATAGGGGAATTAATGGGAGATAATGGTAAAATTTTTGCTATTGATATGACTGCTTCTAGGTTGAAAAAATTAG
AATCAAATACTGAAAGGCTACAGTTAAAATCTATCTCTATTTCTAGAGGTGATAGTCGAAATTTAACTGAGTTTATTAAT
CAAGCTGACCGGGTTTTATTAGATGTACCTTGTTCTGGTTTAGGTACTTTACATCGTAGGGCAGATGCACGGTGGAGAAA
AACTTTAGAGAATATTGGAGAATTGGCTAAACTTCAGGGTGAGTTGCTAGAAAATGCTGCTAAATGGGTGAAGCCTGGGG
GTGTCTTAGTATATGCTACTTGCACAATTTATCCCTTAGAAAATGAGGGAGTTATTGAGAAATTTTTAACTAATAATTAT
GAGTGGGAAATTGAAGCACCAACTGTAGATTTTATGGTTTCACCTTGTAGGGAAGGATGGATAAAAATTTGGCCTCATAG
AGAACAAATGGATGGATTTTTTATGGTTAAATTAAGACGCAAGGTTATTTAG

Upstream 100 bases:

>100_bases
AGTTTATCACTAAATTTATAAAGTTAAATAATGGCTCTAAATCATGTTATTATTTTTGTTAAAATTTTAAAACAATCTAG
AATTTTAAAAATTAATTCCA

Downstream 100 bases:

>100_bases
CATTTCTCTGTTTAACTAGCTAAATTTACGATTCATCTAAATATTTCTCAAAATCTATGGTTTATAAATATATTTATTAA
TATTAAAATAAAAAGTGAAT

Product: sun protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MNNNPRQLAFIILQEIYRKQVFTDVALDRHLKKNDLIDANRRLVTELVYGCVRRQRSLDAIIDQLAKKKSPQQHPYLRII
LHIGLYQLSYLEQIPESAAVDTTVELAKQNKFAKLAGFVNGLLREYIRQNLTINLPENPVQKLGISYSFPNWIVKYWIEE
LGLTEAEKLCYWFNLSPSIDLRINPLKTSVEEVEIAMKNIGISVSRILQVPQALRLNGAVGQIQKLPGYNEGWWSIQDSS
AQLVCYLLNPQPGEIIIDACAAPGGKTTHIGELMGDNGKIFAIDMTASRLKKLESNTERLQLKSISISRGDSRNLTEFIN
QADRVLLDVPCSGLGTLHRRADARWRKTLENIGELAKLQGELLENAAKWVKPGGVLVYATCTIYPLENEGVIEKFLTNNY
EWEIEAPTVDFMVSPCREGWIKIWPHREQMDGFFMVKLRRKVI

Sequences:

>Translated_443_residues
MNNNPRQLAFIILQEIYRKQVFTDVALDRHLKKNDLIDANRRLVTELVYGCVRRQRSLDAIIDQLAKKKSPQQHPYLRII
LHIGLYQLSYLEQIPESAAVDTTVELAKQNKFAKLAGFVNGLLREYIRQNLTINLPENPVQKLGISYSFPNWIVKYWIEE
LGLTEAEKLCYWFNLSPSIDLRINPLKTSVEEVEIAMKNIGISVSRILQVPQALRLNGAVGQIQKLPGYNEGWWSIQDSS
AQLVCYLLNPQPGEIIIDACAAPGGKTTHIGELMGDNGKIFAIDMTASRLKKLESNTERLQLKSISISRGDSRNLTEFIN
QADRVLLDVPCSGLGTLHRRADARWRKTLENIGELAKLQGELLENAAKWVKPGGVLVYATCTIYPLENEGVIEKFLTNNY
EWEIEAPTVDFMVSPCREGWIKIWPHREQMDGFFMVKLRRKVI
>Mature_443_residues
MNNNPRQLAFIILQEIYRKQVFTDVALDRHLKKNDLIDANRRLVTELVYGCVRRQRSLDAIIDQLAKKKSPQQHPYLRII
LHIGLYQLSYLEQIPESAAVDTTVELAKQNKFAKLAGFVNGLLREYIRQNLTINLPENPVQKLGISYSFPNWIVKYWIEE
LGLTEAEKLCYWFNLSPSIDLRINPLKTSVEEVEIAMKNIGISVSRILQVPQALRLNGAVGQIQKLPGYNEGWWSIQDSS
AQLVCYLLNPQPGEIIIDACAAPGGKTTHIGELMGDNGKIFAIDMTASRLKKLESNTERLQLKSISISRGDSRNLTEFIN
QADRVLLDVPCSGLGTLHRRADARWRKTLENIGELAKLQGELLENAAKWVKPGGVLVYATCTIYPLENEGVIEKFLTNNY
EWEIEAPTVDFMVSPCREGWIKIWPHREQMDGFFMVKLRRKVI

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=313, Percent_Identity=31.3099041533546, Blast_Score=141, Evalue=2e-33,
Organism=Homo sapiens, GI76150623, Length=313, Percent_Identity=31.3099041533546, Blast_Score=141, Evalue=2e-33,
Organism=Homo sapiens, GI32698918, Length=170, Percent_Identity=38.8235294117647, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI270288818, Length=288, Percent_Identity=28.125, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI8922322, Length=288, Percent_Identity=28.4722222222222, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI270288816, Length=289, Percent_Identity=28.719723183391, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI23199998, Length=289, Percent_Identity=28.3737024221453, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI39995082, Length=179, Percent_Identity=32.9608938547486, Blast_Score=85, Evalue=2e-16,
Organism=Homo sapiens, GI301336155, Length=179, Percent_Identity=32.9608938547486, Blast_Score=85, Evalue=2e-16,
Organism=Homo sapiens, GI40316918, Length=249, Percent_Identity=29.3172690763052, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI11545785, Length=157, Percent_Identity=32.484076433121, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI2367212, Length=407, Percent_Identity=34.1523341523341, Blast_Score=207, Evalue=8e-55,
Organism=Escherichia coli, GI87081985, Length=271, Percent_Identity=29.8892988929889, Blast_Score=115, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI17536757, Length=231, Percent_Identity=30.3030303030303, Blast_Score=115, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI115534021, Length=170, Percent_Identity=32.3529411764706, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71998419, Length=170, Percent_Identity=32.3529411764706, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI25143471, Length=181, Percent_Identity=30.939226519337, Blast_Score=85, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6324268, Length=282, Percent_Identity=30.4964539007092, Blast_Score=128, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6319447, Length=292, Percent_Identity=24.6575342465753, Blast_Score=76, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6324306, Length=241, Percent_Identity=26.1410788381743, Blast_Score=73, Evalue=8e-14,
Organism=Drosophila melanogaster, GI22024126, Length=318, Percent_Identity=28.6163522012579, Blast_Score=128, Evalue=7e-30,
Organism=Drosophila melanogaster, GI24668781, Length=210, Percent_Identity=34.7619047619048, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI21356513, Length=210, Percent_Identity=34.7619047619048, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI19920494, Length=177, Percent_Identity=32.2033898305085, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI21355201, Length=185, Percent_Identity=27.5675675675676, Blast_Score=82, Evalue=8e-16,
Organism=Drosophila melanogaster, GI21356579, Length=170, Percent_Identity=29.4117647058824, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 50514; Mature: 50514

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNNPRQLAFIILQEIYRKQVFTDVALDRHLKKNDLIDANRRLVTELVYGCVRRQRSLDA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IIDQLAKKKSPQQHPYLRIILHIGLYQLSYLEQIPESAAVDTTVELAKQNKFAKLAGFVN
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHH
GLLREYIRQNLTINLPENPVQKLGISYSFPNWIVKYWIEELGLTEAEKLCYWFNLSPSID
HHHHHHHHCCCEEECCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHEEEEEECCCCEE
LRINPLKTSVEEVEIAMKNIGISVSRILQVPQALRLNGAVGQIQKLPGYNEGWWSIQDSS
EEEEHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHCCCCHHHHHHCCCCCCCCEEEECCC
AQLVCYLLNPQPGEIIIDACAAPGGKTTHIGELMGDNGKIFAIDMTASRLKKLESNTERL
CEEEEEEECCCCCCEEEEECCCCCCCCEEHHHHHCCCCCEEEEECCHHHHHHHHCCHHHE
QLKSISISRGDSRNLTEFINQADRVLLDVPCSGLGTLHRRADARWRKTLENIGELAKLQG
EEEEEEECCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELLENAAKWVKPGGVLVYATCTIYPLENEGVIEKFLTNNYEWEIEAPTVDFMVSPCREGW
HHHHHHHHHCCCCCEEEEEEEEEEECCCCCHHHHHHCCCCEEEEECCCHHHHHCCCCCCC
IKIWPHREQMDGFFMVKLRRKVI
EEECCCHHHCCCEEEEHHHHHCC
>Mature Secondary Structure
MNNNPRQLAFIILQEIYRKQVFTDVALDRHLKKNDLIDANRRLVTELVYGCVRRQRSLDA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IIDQLAKKKSPQQHPYLRIILHIGLYQLSYLEQIPESAAVDTTVELAKQNKFAKLAGFVN
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHH
GLLREYIRQNLTINLPENPVQKLGISYSFPNWIVKYWIEELGLTEAEKLCYWFNLSPSID
HHHHHHHHCCCEEECCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHEEEEEECCCCEE
LRINPLKTSVEEVEIAMKNIGISVSRILQVPQALRLNGAVGQIQKLPGYNEGWWSIQDSS
EEEEHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHCCCCHHHHHHCCCCCCCCEEEECCC
AQLVCYLLNPQPGEIIIDACAAPGGKTTHIGELMGDNGKIFAIDMTASRLKKLESNTERL
CEEEEEEECCCCCCEEEEECCCCCCCCEEHHHHHCCCCCEEEEECCHHHHHHHHCCHHHE
QLKSISISRGDSRNLTEFINQADRVLLDVPCSGLGTLHRRADARWRKTLENIGELAKLQG
EEEEEEECCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELLENAAKWVKPGGVLVYATCTIYPLENEGVIEKFLTNNYEWEIEAPTVDFMVSPCREGW
HHHHHHHHHCCCCCEEEEEEEEEEECCCCCHHHHHHCCCCEEEEECCCHHHHHCCCCCCC
IKIWPHREQMDGFFMVKLRRKVI
EEECCCHHHCCCEEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]