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The map label for this gene is ycbY [C]

Identifier: 113474147

GI number: 113474147

Start: 390886

End: 392010

Strand: Reverse

Name: ycbY [C]

Synonym: Tery_0249

Alternate gene names: 113474147

Gene position: 392010-390886 (Counterclockwise)

Preceding gene: 113474149

Following gene: 113474146

Centisome position: 5.06

GC content: 32.53

Gene sequence:

>1125_bases
ATGAATCAATACTATGCAAAAGTTGCTAAAGGGTTAGAAACTATTGCTGCTCAAGAATTAGAAAATTTAGGAGCTCAAAA
TATATCTCCAGAATTTACAGGGGTAAGTTTTACTGGAGATAAGACTTTACTTTATCGGGTTAATCTCTGGGCTAGAACTA
TTTTTAGAGTCTTAGTTCCTATTGCACAAGTTAGGTGTGTTAACCGAGAAGTTTTATATAAAGAAGTCAAAAAAATTCCT
TGGCAGCAATATATATCTCCTAAAAATACATTGGCAGTTCACTGTACGGGAACTAATGAGAAATTAAAGCATACTCATTA
TACTGCTCTGCAAATAAAGGATGCTATTACTGAGCAACAAATAGAAAAATTTCGCTATAGATCAAATATTGATACTAAAA
ATCCTGAGATATTAATTAATGGTCATATTGAACATAATAATTGTATCCTTAGTTTAGATAGTTCTGGTAGTAGTTTACAT
CAGCGTGGCTATCGGTTGGCAATGGGATTTGCTCCTCTAAAAGAAACTTTAGCAGCAGCTTTATTGGAGATGGCAGAATA
CTCTCCAGAATTGCCTTTTTTAGATCCTTTATGTGGTTCTGGAACTTTACCTTTAGAAGCAAGTTTAAAAGCATTAAATA
TTGCACCTGGATTGTTGAAAAATAATTTTTCTTTTATGAATTGGCGTGATTTTGATAAGTCGATTTGGCAAGATTTATTG
ACAGAAGCTAAGAATAGTCAATTGACTGAATTAAAATCAATAATTGTGGGAAGCGATCGAAATCCGGAGGTACTTTCTCA
AGCTCGTAATAATGCTAAAAAATGTGCTGTTTTAGATAAAATTAAGTTTATCCAAACAGATATATCTAATTTAGAATCTC
CCGCTGAAAAAGGAATAATTATTTGTAATCCTCCTTATGGAGAGCGTTTAGGAGAAGTGGAAGAATTGGGTAAATTTTAT
AAAATGTTGGGGGATATTTTTAAACAACGTTTTACTGGTTGGACGGCTTTTATTTTGACAGGAAATAAGCAGTTATCTAA
ACAGGTGGGGTTAAGAACTTCTGGGAGAATACCTGTTTATAATGGTCCGATTTCTTGTACACTATTAAAGTATGAATTAT
ATTAA

Upstream 100 bases:

>100_bases
AATGTTAATCAATTATTTAACTGATAGTCTTATGCATTTTTTTCAAGCATAATACCAAATAAAGTTATTTTATACTAAAT
ACAAAAATTATTTTTAGGCA

Downstream 100 bases:

>100_bases
TATAAAGAAATTATAGGGCAGAAGGCAGAAATAAAAAAAAGGTTAAAGTTGAGAAATTTTAATTATCTAAACAGGATATA
TAAACAGGAAAAAAATGCAA

Product: putative RNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MNQYYAKVAKGLETIAAQELENLGAQNISPEFTGVSFTGDKTLLYRVNLWARTIFRVLVPIAQVRCVNREVLYKEVKKIP
WQQYISPKNTLAVHCTGTNEKLKHTHYTALQIKDAITEQQIEKFRYRSNIDTKNPEILINGHIEHNNCILSLDSSGSSLH
QRGYRLAMGFAPLKETLAAALLEMAEYSPELPFLDPLCGSGTLPLEASLKALNIAPGLLKNNFSFMNWRDFDKSIWQDLL
TEAKNSQLTELKSIIVGSDRNPEVLSQARNNAKKCAVLDKIKFIQTDISNLESPAEKGIIICNPPYGERLGEVEELGKFY
KMLGDIFKQRFTGWTAFILTGNKQLSKQVGLRTSGRIPVYNGPISCTLLKYELY

Sequences:

>Translated_374_residues
MNQYYAKVAKGLETIAAQELENLGAQNISPEFTGVSFTGDKTLLYRVNLWARTIFRVLVPIAQVRCVNREVLYKEVKKIP
WQQYISPKNTLAVHCTGTNEKLKHTHYTALQIKDAITEQQIEKFRYRSNIDTKNPEILINGHIEHNNCILSLDSSGSSLH
QRGYRLAMGFAPLKETLAAALLEMAEYSPELPFLDPLCGSGTLPLEASLKALNIAPGLLKNNFSFMNWRDFDKSIWQDLL
TEAKNSQLTELKSIIVGSDRNPEVLSQARNNAKKCAVLDKIKFIQTDISNLESPAEKGIIICNPPYGERLGEVEELGKFY
KMLGDIFKQRFTGWTAFILTGNKQLSKQVGLRTSGRIPVYNGPISCTLLKYELY
>Mature_374_residues
MNQYYAKVAKGLETIAAQELENLGAQNISPEFTGVSFTGDKTLLYRVNLWARTIFRVLVPIAQVRCVNREVLYKEVKKIP
WQQYISPKNTLAVHCTGTNEKLKHTHYTALQIKDAITEQQIEKFRYRSNIDTKNPEILINGHIEHNNCILSLDSSGSSLH
QRGYRLAMGFAPLKETLAAALLEMAEYSPELPFLDPLCGSGTLPLEASLKALNIAPGLLKNNFSFMNWRDFDKSIWQDLL
TEAKNSQLTELKSIIVGSDRNPEVLSQARNNAKKCAVLDKIKFIQTDISNLESPAEKGIIICNPPYGERLGEVEELGKFY
KMLGDIFKQRFTGWTAFILTGNKQLSKQVGLRTSGRIPVYNGPISCTLLKYELY

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=379, Percent_Identity=36.4116094986807, Blast_Score=251, Evalue=4e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 42180; Mature: 42180

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQYYAKVAKGLETIAAQELENLGAQNISPEFTGVSFTGDKTLLYRVNLWARTIFRVLVP
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEEEHHHHHHHHHHHHH
IAQVRCVNREVLYKEVKKIPWQQYISPKNTLAVHCTGTNEKLKHTHYTALQIKDAITEQQ
HHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
IEKFRYRSNIDTKNPEILINGHIEHNNCILSLDSSGSSLHQRGYRLAMGFAPLKETLAAA
HHHHHHHCCCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHCCCEEEECHHHHHHHHHHH
LLEMAEYSPELPFLDPLCGSGTLPLEASLKALNIAPGLLKNNFSFMNWRDFDKSIWQDLL
HHHHHHCCCCCCCCCCCCCCCCCCHHHCCHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHH
TEAKNSQLTELKSIIVGSDRNPEVLSQARNNAKKCAVLDKIKFIQTDISNLESPAEKGII
HHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHCCEE
ICNPPYGERLGEVEELGKFYKMLGDIFKQRFTGWTAFILTGNKQLSKQVGLRTSGRIPVY
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHCCCCCCCCEEE
NGPISCTLLKYELY
CCCEEEEEEEEECC
>Mature Secondary Structure
MNQYYAKVAKGLETIAAQELENLGAQNISPEFTGVSFTGDKTLLYRVNLWARTIFRVLVP
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEEEHHHHHHHHHHHHH
IAQVRCVNREVLYKEVKKIPWQQYISPKNTLAVHCTGTNEKLKHTHYTALQIKDAITEQQ
HHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
IEKFRYRSNIDTKNPEILINGHIEHNNCILSLDSSGSSLHQRGYRLAMGFAPLKETLAAA
HHHHHHHCCCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHCCCEEEECHHHHHHHHHHH
LLEMAEYSPELPFLDPLCGSGTLPLEASLKALNIAPGLLKNNFSFMNWRDFDKSIWQDLL
HHHHHHCCCCCCCCCCCCCCCCCCHHHCCHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHH
TEAKNSQLTELKSIIVGSDRNPEVLSQARNNAKKCAVLDKIKFIQTDISNLESPAEKGII
HHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHCCEE
ICNPPYGERLGEVEELGKFYKMLGDIFKQRFTGWTAFILTGNKQLSKQVGLRTSGRIPVY
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHCCCCCCCCEEE
NGPISCTLLKYELY
CCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]