| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474059
Identifier: 113474059
GI number: 113474059
Start: 222270
End: 224264
Strand: Direct
Name: 113474059
Synonym: Tery_0152
Alternate gene names: NA
Gene position: 222270-224264 (Clockwise)
Preceding gene: 113474058
Following gene: 113474060
Centisome position: 2.87
GC content: 31.18
Gene sequence:
>1995_bases ATGGCATCTATAGATCAAATTATTCAAAGAGAACTTAATCCTTTCGATCCTGTAACTCTTTATACTATTAATTTTTGGCA AGAGCAACAAAATTCTAACCTGAATGTTGATTCTATCCATCAAAATATTATCACTGATATAGAAACTGTACTAGAGCAAG TGGCTCAGGAACATCACCCCCGTACTTTGATACTTACAGGTGACTCTGGTTCTGGCAAAAGTTACCTTTTGGGGAGAATT AAAAAATTATTCAATACTAAAGCTTTTTTTGTCTATGTCGATCCTTGGCCTCATAGTGATTATATTTGGAGACATATTTT ACGTCAAACTGTTGACTGCCTGATGAAAACTCCAGATGGTAAAACAGATTCTCAGCTATTACTATGCCTCAAAAGTCTAT TAGCTTTCCCAAATAGTAATTTGGTCCAAAAAATTCTTGGTGAAAGAAGAGTATTCATTAGAAACCTTAAAGCAATTTAC CCTTCTGGGATTTACAATCCTAATGATTTTTTCAGTGTCCTCTATCATCTACTAGATCCCCAGTATAACGCTGTTGCCTG TGAATGGTTACGAGGGGATGATTTGGATGAAGACGATTTAAAATCTTTGGGCATTAAAAATAGTATAGATTCTGAATATT CTGCGCAAAAAATTATTACTAACTTGGGAATTATTTCCGCTGCATCTCAACCTATTGTTTTATGTTTTGATAATCTTGAT AATATTCCTCGCTTGTTAAATGGAACCTTAGATTTACAAGCATTATTTAATGTTAATTCTAGTATTCATACTCACTATCC ACAAAATTTTCTGATAATTATTAGTATTATTACGAGTACCTGGAAACAAAATTCTAAATTCATTCAACCAGCAGATAAAG CCAGAGTTAATGCAGGATATTTCCATTTAAAACCAATTACTTTAGAACAGGGTGAAGCTATATTAGCAACTCGTTTAAAT ACTTTACATTCCCAGGCAACAACTAGGCCTAAATCAGCTACATTTCCTCTGTCAAAAGAAATATTAGAACAGCAGTTTCC CAGAGGAATAACTCTACCTCGGAATATACTAGAATTGGGACGTAAAGAATATGAGCAGTACAAATTAAAATTATTGAATC AGACACAGAATAGTCAAGATTTAACACCAGAAACACAATTGGCGACTTTTAAGTTGATTTGGCAAGACCACTACAATAAG ACTCAGAAAAAAATTAGCAAAATTACTGATTTAGCAGCACCTGAATTGATTCGGATGCTACAAGAAGTATTAAATTCTTT ACAATGTCAGAAGGTAAAAACTAAATTATTAAGTGGGAAATATGCCAGCCATTCTTTGAGTTATCAAAAACAAAACCAAG AGCAAATTATCGGTATAGTTTGGACAGAAGATCCAAATATGAATAGTTTTTACAATACAATGAAGGCTTGTCAGAAAGTA GTGAATAAAAAATTGTGTCAAACTTTATATTTACTGAGAACTTCTGAGGTAGGAAATTCTAAAAATCTTAGCAATAAAAT ATATAGAAAAATTTTCCAAGGTAAGTCAAAAAATATTCATATTAAACCTAATTTAGAATCGGTGCATTTTTTAGCTACAC ATCATAGTTTGGTGAATGCTGTCCTCGCTAATGAATTAGTTATTGAAGGTAAGATTATTAATTTGAAAAAGTTTGAAGAA ATAATTGGTGAATCACAAATTTTCAATAACTGTAGCTTATTAAAATATTTTTCTGTAGTTGTTTCTGTAGGTACTCAAGA ACAGGAAAATGATCTAGATTTAGATGAGGTCAAGGATTTTGTATTAAATTTAATTAGAAAACAAAGTTTGATGGAACGCA ACAGCATAATCGAAAATACACTAAATCAATTTGTCAAAATAGAAGGTTCAAAAATTGATATAATAATAACAGAGCTTGAG GGAGAAAATAAAATAAAAATTATTACTCCTACATTAGGATTAGATGAACAATTAGTTTGTTTTGTTCCTGGTTAA
Upstream 100 bases:
>100_bases AAAAGTTAATCTAGCAGTATTTTTAGAAACTGGTATAAATCTTCTTATATCTGCTATCGTAATTCTCTAAGCATCCTTAA AAATACTAACAATTTATATT
Downstream 100 bases:
>100_bases TAAGGAATTTATAACTGATTATTAGAATGATTAACTATTTTTAATATAAACTATAGTAATTCTCATCTCTGAGTGAAGTG CAAAATTCTTTCGTTACGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 664; Mature: 663
Protein sequence:
>664_residues MASIDQIIQRELNPFDPVTLYTINFWQEQQNSNLNVDSIHQNIITDIETVLEQVAQEHHPRTLILTGDSGSGKSYLLGRI KKLFNTKAFFVYVDPWPHSDYIWRHILRQTVDCLMKTPDGKTDSQLLLCLKSLLAFPNSNLVQKILGERRVFIRNLKAIY PSGIYNPNDFFSVLYHLLDPQYNAVACEWLRGDDLDEDDLKSLGIKNSIDSEYSAQKIITNLGIISAASQPIVLCFDNLD NIPRLLNGTLDLQALFNVNSSIHTHYPQNFLIIISIITSTWKQNSKFIQPADKARVNAGYFHLKPITLEQGEAILATRLN TLHSQATTRPKSATFPLSKEILEQQFPRGITLPRNILELGRKEYEQYKLKLLNQTQNSQDLTPETQLATFKLIWQDHYNK TQKKISKITDLAAPELIRMLQEVLNSLQCQKVKTKLLSGKYASHSLSYQKQNQEQIIGIVWTEDPNMNSFYNTMKACQKV VNKKLCQTLYLLRTSEVGNSKNLSNKIYRKIFQGKSKNIHIKPNLESVHFLATHHSLVNAVLANELVIEGKIINLKKFEE IIGESQIFNNCSLLKYFSVVVSVGTQEQENDLDLDEVKDFVLNLIRKQSLMERNSIIENTLNQFVKIEGSKIDIIITELE GENKIKIITPTLGLDEQLVCFVPG
Sequences:
>Translated_664_residues MASIDQIIQRELNPFDPVTLYTINFWQEQQNSNLNVDSIHQNIITDIETVLEQVAQEHHPRTLILTGDSGSGKSYLLGRI KKLFNTKAFFVYVDPWPHSDYIWRHILRQTVDCLMKTPDGKTDSQLLLCLKSLLAFPNSNLVQKILGERRVFIRNLKAIY PSGIYNPNDFFSVLYHLLDPQYNAVACEWLRGDDLDEDDLKSLGIKNSIDSEYSAQKIITNLGIISAASQPIVLCFDNLD NIPRLLNGTLDLQALFNVNSSIHTHYPQNFLIIISIITSTWKQNSKFIQPADKARVNAGYFHLKPITLEQGEAILATRLN TLHSQATTRPKSATFPLSKEILEQQFPRGITLPRNILELGRKEYEQYKLKLLNQTQNSQDLTPETQLATFKLIWQDHYNK TQKKISKITDLAAPELIRMLQEVLNSLQCQKVKTKLLSGKYASHSLSYQKQNQEQIIGIVWTEDPNMNSFYNTMKACQKV VNKKLCQTLYLLRTSEVGNSKNLSNKIYRKIFQGKSKNIHIKPNLESVHFLATHHSLVNAVLANELVIEGKIINLKKFEE IIGESQIFNNCSLLKYFSVVVSVGTQEQENDLDLDEVKDFVLNLIRKQSLMERNSIIENTLNQFVKIEGSKIDIIITELE GENKIKIITPTLGLDEQLVCFVPG >Mature_663_residues ASIDQIIQRELNPFDPVTLYTINFWQEQQNSNLNVDSIHQNIITDIETVLEQVAQEHHPRTLILTGDSGSGKSYLLGRIK KLFNTKAFFVYVDPWPHSDYIWRHILRQTVDCLMKTPDGKTDSQLLLCLKSLLAFPNSNLVQKILGERRVFIRNLKAIYP SGIYNPNDFFSVLYHLLDPQYNAVACEWLRGDDLDEDDLKSLGIKNSIDSEYSAQKIITNLGIISAASQPIVLCFDNLDN IPRLLNGTLDLQALFNVNSSIHTHYPQNFLIIISIITSTWKQNSKFIQPADKARVNAGYFHLKPITLEQGEAILATRLNT LHSQATTRPKSATFPLSKEILEQQFPRGITLPRNILELGRKEYEQYKLKLLNQTQNSQDLTPETQLATFKLIWQDHYNKT QKKISKITDLAAPELIRMLQEVLNSLQCQKVKTKLLSGKYASHSLSYQKQNQEQIIGIVWTEDPNMNSFYNTMKACQKVV NKKLCQTLYLLRTSEVGNSKNLSNKIYRKIFQGKSKNIHIKPNLESVHFLATHHSLVNAVLANELVIEGKIINLKKFEEI IGESQIFNNCSLLKYFSVVVSVGTQEQENDLDLDEVKDFVLNLIRKQSLMERNSIIENTLNQFVKIEGSKIDIIITELEG ENKIKIITPTLGLDEQLVCFVPG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75900; Mature: 75769
Theoretical pI: Translated: 7.98; Mature: 7.98
Prosite motif: PS00675 SIGMA54_INTERACT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASIDQIIQRELNPFDPVTLYTINFWQEQQNSNLNVDSIHQNIITDIETVLEQVAQEHHP CCCHHHHHHHHCCCCCCEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC RTLILTGDSGSGKSYLLGRIKKLFNTKAFFVYVDPWPHSDYIWRHILRQTVDCLMKTPDG CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC KTDSQLLLCLKSLLAFPNSNLVQKILGERRVFIRNLKAIYPSGIYNPNDFFSVLYHLLDP CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC QYNAVACEWLRGDDLDEDDLKSLGIKNSIDSEYSAQKIITNLGIISAASQPIVLCFDNLD CCCCEEEEECCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC NIPRLLNGTLDLQALFNVNSSIHTHYPQNFLIIISIITSTWKQNSKFIQPADKARVNAGY CHHHHHCCCCCCHHHHCCCCCEECCCCCCCEEHHHHHHHHHHCCCCCCCCCHHCCCCCCE FHLKPITLEQGEAILATRLNTLHSQATTRPKSATFPLSKEILEQQFPRGITLPRNILELG EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHH RKEYEQYKLKLLNQTQNSQDLTPETQLATFKLIWQDHYNKTQKKISKITDLAAPELIRML HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH QEVLNSLQCQKVKTKLLSGKYASHSLSYQKQNQEQIIGIVWTEDPNMNSFYNTMKACQKV HHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHH VNKKLCQTLYLLRTSEVGNSKNLSNKIYRKIFQGKSKNIHIKPNLESVHFLATHHSLVNA HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHH VLANELVIEGKIINLKKFEEIIGESQIFNNCSLLKYFSVVVSVGTQEQENDLDLDEVKDF HHHHHHEEECEEECHHHHHHHHCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH VLNLIRKQSLMERNSIIENTLNQFVKIEGSKIDIIITELEGENKIKIITPTLGLDEQLVC HHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEEEECCCCEEEEEECCCCCCCCEEE FVPG EECC >Mature Secondary Structure ASIDQIIQRELNPFDPVTLYTINFWQEQQNSNLNVDSIHQNIITDIETVLEQVAQEHHP CCHHHHHHHHCCCCCCEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC RTLILTGDSGSGKSYLLGRIKKLFNTKAFFVYVDPWPHSDYIWRHILRQTVDCLMKTPDG CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC KTDSQLLLCLKSLLAFPNSNLVQKILGERRVFIRNLKAIYPSGIYNPNDFFSVLYHLLDP CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC QYNAVACEWLRGDDLDEDDLKSLGIKNSIDSEYSAQKIITNLGIISAASQPIVLCFDNLD CCCCEEEEECCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC NIPRLLNGTLDLQALFNVNSSIHTHYPQNFLIIISIITSTWKQNSKFIQPADKARVNAGY CHHHHHCCCCCCHHHHCCCCCEECCCCCCCEEHHHHHHHHHHCCCCCCCCCHHCCCCCCE FHLKPITLEQGEAILATRLNTLHSQATTRPKSATFPLSKEILEQQFPRGITLPRNILELG EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHH RKEYEQYKLKLLNQTQNSQDLTPETQLATFKLIWQDHYNKTQKKISKITDLAAPELIRML HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH QEVLNSLQCQKVKTKLLSGKYASHSLSYQKQNQEQIIGIVWTEDPNMNSFYNTMKACQKV HHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHH VNKKLCQTLYLLRTSEVGNSKNLSNKIYRKIFQGKSKNIHIKPNLESVHFLATHHSLVNA HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHH VLANELVIEGKIINLKKFEEIIGESQIFNNCSLLKYFSVVVSVGTQEQENDLDLDEVKDF HHHHHHEEECEEECHHHHHHHHCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH VLNLIRKQSLMERNSIIENTLNQFVKIEGSKIDIIITELEGENKIKIITPTLGLDEQLVC HHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEEEECCCCEEEEEECCCCCCCCEEE FVPG EECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA