| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474058
Identifier: 113474058
GI number: 113474058
Start: 221200
End: 222018
Strand: Direct
Name: 113474058
Synonym: Tery_0151
Alternate gene names: NA
Gene position: 221200-222018 (Clockwise)
Preceding gene: 113474055
Following gene: 113474059
Centisome position: 2.85
GC content: 35.41
Gene sequence:
>819_bases ATGGATCTTAAACATCTAAAATTTATTTTAAAATTACTAGGCTACAAAAACTATCGAGTATCTATTAATAAAATTCAGCC AGAGCATGGAATGAAGGTTTCTGAGAGGGATGAAATCTGTTACCGCCTTTGCGATCAAGGTTTAGTAGAGTTTACAAGGG AGGTTACAAAAATTAATATATCAGCCCAGGGAAAATCATTTCTAGATAGTAAAAAAGATAGCAATTCACTAACCTCAGAA GAGTTAAAAGTACTCAAAGCAACTGCTCGGGGTGCTATTTCTCCGGGAGCAACTGGTATCATGCCTAGCTATAGAGAAGC TGTCATTACAGATTTACTAGACCAGGATTTAATCAAAGTTGTTGCTCAAAAAATCAAAGAAGTTTGGCTAACAGAAAAAG GAAAGCAATTTTTGTGCCAAGAATATTCATCTCACAGTACGGCAAAAGAAATCTCATTGAAAATGTTAAGTGATTATCTC CAGTTAATGCGTACAAACTACAATCAGGAAAAAAAACCGTTGTTTTCTGGAGATTCAAAAAAAAAACAAAAACCCAATGA CGATCAAATTTTAGCAGAGATTTGGTCTTTAGACAATCGTCATGGTACAGATAAGTACTTACCGATTTTTCATCTACGAG AAAAGCTACAACCCCGTTTATCCCGAGAAGAACTAGATCAGGCACTCTACCGTTTAGAAAGAAATCATCAAATAGAATTA AGTTCCCTACAGGAGGTAAGATCCTATACACCAGAGCAAATTGAAGCAGGTATCCCTCAAAACATTGGCGGATGTTTATT TTTTATCATTCTCGACTAA
Upstream 100 bases:
>100_bases TTATTTTGTAACTTTTTTGCACAAAATAGTCAAGGTTTACCTATTTGATTAATAATAGTATTAATTGGCTAATTTTTGCA AGTGGGGAGAAGATGATCGC
Downstream 100 bases:
>100_bases TACAAAATTACCAAAAAATCTTTACAGTTAAAAAAAAGAGCAGATAAGGACGTTCCATCGAACGTCCCTAAGTCTTAGGG AATAGGGAAAATCCTTGCTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 272; Mature: 272
Protein sequence:
>272_residues MDLKHLKFILKLLGYKNYRVSINKIQPEHGMKVSERDEICYRLCDQGLVEFTREVTKINISAQGKSFLDSKKDSNSLTSE ELKVLKATARGAISPGATGIMPSYREAVITDLLDQDLIKVVAQKIKEVWLTEKGKQFLCQEYSSHSTAKEISLKMLSDYL QLMRTNYNQEKKPLFSGDSKKKQKPNDDQILAEIWSLDNRHGTDKYLPIFHLREKLQPRLSREELDQALYRLERNHQIEL SSLQEVRSYTPEQIEAGIPQNIGGCLFFIILD
Sequences:
>Translated_272_residues MDLKHLKFILKLLGYKNYRVSINKIQPEHGMKVSERDEICYRLCDQGLVEFTREVTKINISAQGKSFLDSKKDSNSLTSE ELKVLKATARGAISPGATGIMPSYREAVITDLLDQDLIKVVAQKIKEVWLTEKGKQFLCQEYSSHSTAKEISLKMLSDYL QLMRTNYNQEKKPLFSGDSKKKQKPNDDQILAEIWSLDNRHGTDKYLPIFHLREKLQPRLSREELDQALYRLERNHQIEL SSLQEVRSYTPEQIEAGIPQNIGGCLFFIILD >Mature_272_residues MDLKHLKFILKLLGYKNYRVSINKIQPEHGMKVSERDEICYRLCDQGLVEFTREVTKINISAQGKSFLDSKKDSNSLTSE ELKVLKATARGAISPGATGIMPSYREAVITDLLDQDLIKVVAQKIKEVWLTEKGKQFLCQEYSSHSTAKEISLKMLSDYL QLMRTNYNQEKKPLFSGDSKKKQKPNDDQILAEIWSLDNRHGTDKYLPIFHLREKLQPRLSREELDQALYRLERNHQIEL SSLQEVRSYTPEQIEAGIPQNIGGCLFFIILD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31381; Mature: 31381
Theoretical pI: Translated: 8.56; Mature: 8.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLKHLKFILKLLGYKNYRVSINKIQPEHGMKVSERDEICYRLCDQGLVEFTREVTKINI CCHHHHHHHHHHHCCCCCEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEC SAQGKSFLDSKKDSNSLTSEELKVLKATARGAISPGATGIMPSYREAVITDLLDQDLIKV CCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH VAQKIKEVWLTEKGKQFLCQEYSSHSTAKEISLKMLSDYLQLMRTNYNQEKKPLFSGDSK HHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC KKQKPNDDQILAEIWSLDNRHGTDKYLPIFHLREKLQPRLSREELDQALYRLERNHQIEL CCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHH SSLQEVRSYTPEQIEAGIPQNIGGCLFFIILD HHHHHHHCCCHHHHHCCCCCCCCCEEEEEEEC >Mature Secondary Structure MDLKHLKFILKLLGYKNYRVSINKIQPEHGMKVSERDEICYRLCDQGLVEFTREVTKINI CCHHHHHHHHHHHCCCCCEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEC SAQGKSFLDSKKDSNSLTSEELKVLKATARGAISPGATGIMPSYREAVITDLLDQDLIKV CCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH VAQKIKEVWLTEKGKQFLCQEYSSHSTAKEISLKMLSDYLQLMRTNYNQEKKPLFSGDSK HHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC KKQKPNDDQILAEIWSLDNRHGTDKYLPIFHLREKLQPRLSREELDQALYRLERNHQIEL CCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHH SSLQEVRSYTPEQIEAGIPQNIGGCLFFIILD HHHHHHHCCCHHHHHCCCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA