| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is hisA [H]
Identifier: 110835140
GI number: 110835140
Start: 2598714
End: 2599490
Strand: Reverse
Name: hisA [H]
Synonym: ABO_2279
Alternate gene names: 110835140
Gene position: 2599490-2598714 (Counterclockwise)
Preceding gene: 110835141
Following gene: 110835139
Centisome position: 83.31
GC content: 57.14
Gene sequence:
>777_bases ATGCCGATTTCCATGAATTTAAATGAAGAGATTCTGATGTTACTGATTCCCGCCATCGATCTGAAAGACGGTAAATGTGT ACGCCTTAAGCAAGGGCGGATGGAAGACGATACGGTGTTTTCCGAAGATCCGGTGGCCGTTGCCAGCCATTGGGTGGAGC GGGGTGCCCGCCGCTTGCATTTGGTCGACTTGAATGGGGCCTTTGCCGGTGAGCCGGTGAACGGCGATATCGTCAAAGCG ATTGCCAAGGCGCACCCGGATTTACCGATCCAGATTGGGGGTGGCATCCGCAGCCCGGAAATCATTCAGGCTTATCTAGA TGCCGGGGTGCAGTGGGTGATCATCGGCACCAAGGCCGTGAATGAGCCGGCTTTCGTGAAAGCCATGTGCGAGCAGTTCC CCGGCCACATTATCGTGGGTCTGGACGCGAAAGACGGCAAGGTGGCCACCGATGGCTGGGCCAATGTCACCGATGTGGAT GTGATCGACCTGGCGAAACAATTCGAGAACGATGGCGTTTCGGCCATCGTCTACACCGACATCAGCCGTGATGGCATGTT GCAGGGGGTGAATGTGGACGCCACTGTGCGCTTGGCCCAGTCCATGTCGATCCCGGTGATCGCTTCCGGCGGCATTACCA ATCTTGATGACGTGCGCAACCTGTGTGCAGTGGCCGATCAGGGCATCAGTGGTGCTATCACGGGCCGTGCCATCTATGAG AACACCCTGGACTTTGCCGATGGTCAGGCGTTGTCCGATGAGTTGAGCGGCGCCTGA
Upstream 100 bases:
>100_bases TGTTGGAAAACTTCCTGCGCTGGCAGCCATAAAAGACAGCAGGCTTGCACGCTAGGGTTTCTCTCTACGGTGTTCGTATA ACGGGCGCGGCGGGGGAGGG
Downstream 100 bases:
>100_bases GCGCCGGGGACGTATTATGGGTTTAGCCAAACGCATTATTCCGTGTCTGGATGTGGACGCCGGCCGAGTGGTCAAGGGCG TGCAATTCGTGGATATCCGT
Product: phosphoribosylformimino-5-aminoimidazolecarboxam ide ribotide
Products: NA
Alternate protein names: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [H]
Number of amino acids: Translated: 258; Mature: 257
Protein sequence:
>258_residues MPISMNLNEEILMLLIPAIDLKDGKCVRLKQGRMEDDTVFSEDPVAVASHWVERGARRLHLVDLNGAFAGEPVNGDIVKA IAKAHPDLPIQIGGGIRSPEIIQAYLDAGVQWVIIGTKAVNEPAFVKAMCEQFPGHIIVGLDAKDGKVATDGWANVTDVD VIDLAKQFENDGVSAIVYTDISRDGMLQGVNVDATVRLAQSMSIPVIASGGITNLDDVRNLCAVADQGISGAITGRAIYE NTLDFADGQALSDELSGA
Sequences:
>Translated_258_residues MPISMNLNEEILMLLIPAIDLKDGKCVRLKQGRMEDDTVFSEDPVAVASHWVERGARRLHLVDLNGAFAGEPVNGDIVKA IAKAHPDLPIQIGGGIRSPEIIQAYLDAGVQWVIIGTKAVNEPAFVKAMCEQFPGHIIVGLDAKDGKVATDGWANVTDVD VIDLAKQFENDGVSAIVYTDISRDGMLQGVNVDATVRLAQSMSIPVIASGGITNLDDVRNLCAVADQGISGAITGRAIYE NTLDFADGQALSDELSGA >Mature_257_residues PISMNLNEEILMLLIPAIDLKDGKCVRLKQGRMEDDTVFSEDPVAVASHWVERGARRLHLVDLNGAFAGEPVNGDIVKAI AKAHPDLPIQIGGGIRSPEIIQAYLDAGVQWVIIGTKAVNEPAFVKAMCEQFPGHIIVGLDAKDGKVATDGWANVTDVDV IDLAKQFENDGVSAIVYTDISRDGMLQGVNVDATVRLAQSMSIPVIASGGITNLDDVRNLCAVADQGISGAITGRAIYEN TLDFADGQALSDELSGA
Specific function: Histidine biosynthesis; fourth step. [C]
COG id: COG0106
COG function: function code E; Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hisA/hisF family [H]
Homologues:
Organism=Escherichia coli, GI87082028, Length=237, Percent_Identity=35.0210970464135, Blast_Score=123, Evalue=1e-29, Organism=Escherichia coli, GI1788336, Length=247, Percent_Identity=24.6963562753036, Blast_Score=77, Evalue=9e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR006062 - InterPro: IPR006063 - InterPro: IPR023016 - InterPro: IPR011060 [H]
Pfam domain/function: PF00977 His_biosynth [H]
EC number: =5.3.1.16 [H]
Molecular weight: Translated: 27404; Mature: 27272
Theoretical pI: Translated: 4.24; Mature: 4.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPISMNLNEEILMLLIPAIDLKDGKCVRLKQGRMEDDTVFSEDPVAVASHWVERGARRLH CCCCCCCCHHEEEEEEECCCCCCCCEEEEECCCCCCCCEECCCCHHHHHHHHHCCCCEEE LVDLNGAFAGEPVNGDIVKAIAKAHPDLPIQIGGGIRSPEIIQAYLDAGVQWVIIGTKAV EEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEEECCCC NEPAFVKAMCEQFPGHIIVGLDAKDGKVATDGWANVTDVDVIDLAKQFENDGVSAIVYTD CCHHHHHHHHHHCCCEEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEEE ISRDGMLQGVNVDATVRLAQSMSIPVIASGGITNLDDVRNLCAVADQGISGAITGRAIYE CCCCCCEECCCCCCEEEEHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCHHH NTLDFADGQALSDELSGA CCCCCCCCCHHHHHHCCC >Mature Secondary Structure PISMNLNEEILMLLIPAIDLKDGKCVRLKQGRMEDDTVFSEDPVAVASHWVERGARRLH CCCCCCCHHEEEEEEECCCCCCCCEEEEECCCCCCCCEECCCCHHHHHHHHHCCCCEEE LVDLNGAFAGEPVNGDIVKAIAKAHPDLPIQIGGGIRSPEIIQAYLDAGVQWVIIGTKAV EEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEEECCCC NEPAFVKAMCEQFPGHIIVGLDAKDGKVATDGWANVTDVDVIDLAKQFENDGVSAIVYTD CCHHHHHHHHHHCCCEEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEEE ISRDGMLQGVNVDATVRLAQSMSIPVIASGGITNLDDVRNLCAVADQGISGAITGRAIYE CCCCCCEECCCCCCEEEEHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCHHH NTLDFADGQALSDELSGA CCCCCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA