| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is glnA [H]
Identifier: 110835123
GI number: 110835123
Start: 2581577
End: 2582983
Strand: Reverse
Name: glnA [H]
Synonym: ABO_2262
Alternate gene names: 110835123
Gene position: 2582983-2581577 (Counterclockwise)
Preceding gene: 110835124
Following gene: 110835122
Centisome position: 82.78
GC content: 53.94
Gene sequence:
>1407_bases ATGTCTGTTAAGACCCTCAAACTGATCAAAGAAAACGATGTGAAATGGGTGGACCTGCGCTTCACCGATAGCTCTGGTAA GGAGCAGCACGTTACCCTTCCGGTTGGCGAAATCGACGAAGATTTCTTCCAGGACGGCAAAATGTTTGATGGCTCCTCCA TCGCTGGTTGGAAGGGCATCAACGAATCGGACATGGTGATGATGCCGGACGACGAGTCCGCCGTGCTGGACCCGTTCACT GACGTTGCTACCCTGAACTTGCGCTGCGACATTCTTGAGCCGACCACCATGCAAGGTTACGAGCGCGACCCGCGTTCCGT TGCCCGTCGTGCTGAGGAATACCTGAAATCTACTGGTATCGCGGATACCGCTCTGTTCGGCCCTGAGCCGGAGTTTTTCG TATTTGACTCCGTGCAGTGGAAGTCCGACATGCAGGGTTCCATGTATAACATCCACTCTGAAGAAGCTGCGTGGGTTTCC CATGAAGACTTTGAGGGCGGCAACATTGGTCACCGTCCTGGTGTGAAAGGCGGTTACTTTCCGGTTCCTCCGGTAGACAG CCTGCACGATCTGCGTGGCGCCATGTGTTCTGCCATGGAGTCCATGGGGCTGAAAATTGAAGTGCATCACCACGAAGTGG GCACGGCTGGTCAGTGTGAGATCGGTGTTGGCGCCAACACCCTGACCGCCAAAGCGGACGAAGTACAGATTCTTAAGTAC TGCGTACACAATGTGGCTCACGCTTACGGCAAGACAGCTACTTTCATGCCTAAGCCGCTGATCGGTGATAACGGCTCTGG TATGCACGTGCACGTATCCCTGGGTAAAGACGGCAAAAACCTGTTCGCCGGTGACGGCTATGCTGGTCTGTCTGATGAAG CGTTGTATTTCATTGGCGGTATCATTAAGCATGCCCGTGCGCTGAACGCATTCACCAATGCGTCCACTAACGCTTACAAG CGTCTGGTGCCCGGTTTTGAAGCGCCGGTAATGTTGGCCTACTCTGCCCGTAACCGTTCTGCATCTATCCGCATCCCGTT TGTGAACAGTGCTAAGGCCCGTCGTGTGGAAGCGCGCTTCCCTGACCCGTCTGCCAACCCGTACCTGTGCTTTGCTTCCC TGCTGATGGCTGGCTTGGACGGCATCAAGAACAAGATGCACCCTGGCGATGCCATGGACAAAGATTTGTATGATTTGCCG GCTGAAGAAGCAAAAGACATTCCTACCGTGGCTCACACTTTGACCATGGCCTTGGATTGTCTGGAAGAAGACATGGACTT CCTGACCGAAGGTGACGTGTTCACCAAGGATATGCTGGAAGGCTACATCGAGCTGAAGCGTGCCGAGGTTGAGCGTCTGA ACATGACCCCGCACCCGGTTGAGTTTGATATGTACTACTCTTGCTAA
Upstream 100 bases:
>100_bases GGCCCAGTGGCCGAGAATACCGGTTCTTTGTGTTGCGCTTCCTCAGAGCGGCACGACGAGTCAGAGACAAACCCGCTGTT CCTTAGGAGGACGCACGATA
Downstream 100 bases:
>100_bases TGCCTTCGGGTCGCTAGCAGAACAGAGCCTCCGCTTGTCGGGGGCTTTTTTTTGCCTGGAATAAAGGCGGCGGTTTTGTG CACTCCCCCCTTTTCTGAGC
Product: glutamine synthetase, type I
Products: NA
Alternate protein names: Glutamate--ammonia ligase [H]
Number of amino acids: Translated: 468; Mature: 467
Protein sequence:
>468_residues MSVKTLKLIKENDVKWVDLRFTDSSGKEQHVTLPVGEIDEDFFQDGKMFDGSSIAGWKGINESDMVMMPDDESAVLDPFT DVATLNLRCDILEPTTMQGYERDPRSVARRAEEYLKSTGIADTALFGPEPEFFVFDSVQWKSDMQGSMYNIHSEEAAWVS HEDFEGGNIGHRPGVKGGYFPVPPVDSLHDLRGAMCSAMESMGLKIEVHHHEVGTAGQCEIGVGANTLTAKADEVQILKY CVHNVAHAYGKTATFMPKPLIGDNGSGMHVHVSLGKDGKNLFAGDGYAGLSDEALYFIGGIIKHARALNAFTNASTNAYK RLVPGFEAPVMLAYSARNRSASIRIPFVNSAKARRVEARFPDPSANPYLCFASLLMAGLDGIKNKMHPGDAMDKDLYDLP AEEAKDIPTVAHTLTMALDCLEEDMDFLTEGDVFTKDMLEGYIELKRAEVERLNMTPHPVEFDMYYSC
Sequences:
>Translated_468_residues MSVKTLKLIKENDVKWVDLRFTDSSGKEQHVTLPVGEIDEDFFQDGKMFDGSSIAGWKGINESDMVMMPDDESAVLDPFT DVATLNLRCDILEPTTMQGYERDPRSVARRAEEYLKSTGIADTALFGPEPEFFVFDSVQWKSDMQGSMYNIHSEEAAWVS HEDFEGGNIGHRPGVKGGYFPVPPVDSLHDLRGAMCSAMESMGLKIEVHHHEVGTAGQCEIGVGANTLTAKADEVQILKY CVHNVAHAYGKTATFMPKPLIGDNGSGMHVHVSLGKDGKNLFAGDGYAGLSDEALYFIGGIIKHARALNAFTNASTNAYK RLVPGFEAPVMLAYSARNRSASIRIPFVNSAKARRVEARFPDPSANPYLCFASLLMAGLDGIKNKMHPGDAMDKDLYDLP AEEAKDIPTVAHTLTMALDCLEEDMDFLTEGDVFTKDMLEGYIELKRAEVERLNMTPHPVEFDMYYSC >Mature_467_residues SVKTLKLIKENDVKWVDLRFTDSSGKEQHVTLPVGEIDEDFFQDGKMFDGSSIAGWKGINESDMVMMPDDESAVLDPFTD VATLNLRCDILEPTTMQGYERDPRSVARRAEEYLKSTGIADTALFGPEPEFFVFDSVQWKSDMQGSMYNIHSEEAAWVSH EDFEGGNIGHRPGVKGGYFPVPPVDSLHDLRGAMCSAMESMGLKIEVHHHEVGTAGQCEIGVGANTLTAKADEVQILKYC VHNVAHAYGKTATFMPKPLIGDNGSGMHVHVSLGKDGKNLFAGDGYAGLSDEALYFIGGIIKHARALNAFTNASTNAYKR LVPGFEAPVMLAYSARNRSASIRIPFVNSAKARRVEARFPDPSANPYLCFASLLMAGLDGIKNKMHPGDAMDKDLYDLPA EEAKDIPTVAHTLTMALDCLEEDMDFLTEGDVFTKDMLEGYIELKRAEVERLNMTPHPVEFDMYYSC
Specific function: Unknown
COG id: COG0174
COG function: function code E; Glutamine synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glutamine synthetase family [H]
Homologues:
Organism=Escherichia coli, GI1790301, Length=464, Percent_Identity=67.6724137931034, Blast_Score=684, Evalue=0.0, Organism=Escherichia coli, GI87081870, Length=175, Percent_Identity=30.2857142857143, Blast_Score=80, Evalue=3e-16,
Paralogues:
None
Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 15324 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal medi
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008147 - InterPro: IPR014746 - InterPro: IPR008146 - InterPro: IPR004809 - InterPro: IPR001637 [H]
Pfam domain/function: PF00120 Gln-synt_C; PF03951 Gln-synt_N [H]
EC number: =6.3.1.2 [H]
Molecular weight: Translated: 51609; Mature: 51478
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: PS00180 GLNA_1 ; PS00181 GLNA_ATP ; PS00182 GLNA_ADENYLATION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVKTLKLIKENDVKWVDLRFTDSSGKEQHVTLPVGEIDEDFFQDGKMFDGSSIAGWKGI CCCCEEEHEECCCCEEEEEEEECCCCCCEEEEECCCCCCHHHHHCCCEECCCCCCCCCCC NESDMVMMPDDESAVLDPFTDVATLNLRCDILEPTTMQGYERDPRSVARRAEEYLKSTGI CCCCEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC ADTALFGPEPEFFVFDSVQWKSDMQGSMYNIHSEEAAWVSHEDFEGGNIGHRPGVKGGYF CHHHCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC PVPPVDSLHDLRGAMCSAMESMGLKIEVHHHEVGTAGQCEIGVGANTLTAKADEVQILKY CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCEECCHHHHHHHHH CVHNVAHAYGKTATFMPKPLIGDNGSGMHVHVSLGKDGKNLFAGDGYAGLSDEALYFIGG HHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCHHHHHHH IIKHARALNAFTNASTNAYKRLVPGFEAPVMLAYSARNRSASIRIPFVNSAKARRVEARF HHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCEEECCC PDPSANPYLCFASLLMAGLDGIKNKMHPGDAMDKDLYDLPAEEAKDIPTVAHTLTMALDC CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHCCCHHHHHHHHHHHH LEEDMDFLTEGDVFTKDMLEGYIELKRAEVERLNMTPHPVEFDMYYSC HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC >Mature Secondary Structure SVKTLKLIKENDVKWVDLRFTDSSGKEQHVTLPVGEIDEDFFQDGKMFDGSSIAGWKGI CCCEEEHEECCCCEEEEEEEECCCCCCEEEEECCCCCCHHHHHCCCEECCCCCCCCCCC NESDMVMMPDDESAVLDPFTDVATLNLRCDILEPTTMQGYERDPRSVARRAEEYLKSTGI CCCCEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC ADTALFGPEPEFFVFDSVQWKSDMQGSMYNIHSEEAAWVSHEDFEGGNIGHRPGVKGGYF CHHHCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC PVPPVDSLHDLRGAMCSAMESMGLKIEVHHHEVGTAGQCEIGVGANTLTAKADEVQILKY CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCEECCHHHHHHHHH CVHNVAHAYGKTATFMPKPLIGDNGSGMHVHVSLGKDGKNLFAGDGYAGLSDEALYFIGG HHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCHHHHHHH IIKHARALNAFTNASTNAYKRLVPGFEAPVMLAYSARNRSASIRIPFVNSAKARRVEARF HHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCEEECCC PDPSANPYLCFASLLMAGLDGIKNKMHPGDAMDKDLYDLPAEEAKDIPTVAHTLTMALDC CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHCCCHHHHHHHHHHHH LEEDMDFLTEGDVFTKDMLEGYIELKRAEVERLNMTPHPVEFDMYYSC HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1969923 [H]