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The map label for this gene is hfq

Identifier: 110835064

GI number: 110835064

Start: 2515111

End: 2515392

Strand: Reverse

Name: hfq

Synonym: ABO_2203

Alternate gene names: 110835064

Gene position: 2515392-2515111 (Counterclockwise)

Preceding gene: 110835065

Following gene: 110835063

Centisome position: 80.62

GC content: 51.42

Gene sequence:

>282_bases
ATGTCAAAGGGGCACTCGCTACAAGACCCTTTCCTGAACGCGCTGCGTAAAGAGCGTATTCCGGTTTCTATTTTCCTGGT
AAATGGGATAAAGCTGCAGGGTCAAATTGAATCTTTTGACCAATATGTCGTGCTGTTGAAAAATGCAGTAAGCCAAATGG
TATACAAACACGCTATTTCTACCGTGGTTCCGGCCCGCAATCCGCGCGCAACGGGCAACCCGGCTATGGCTGCGGGTGCT
ACTGCTGCGCCAGCTGCCGATGAAGGGTACGGCAACCAGTAA

Upstream 100 bases:

>100_bases
TTGAAGCTGTGCTTGATTAGGCACGGCTTTGCGGCGGCATCGCGCTGATTGCCCGAAGTGTTGGGCGCTACTTTTTACTG
TTATTTCAAGGAGATCTACC

Downstream 100 bases:

>100_bases
CCTGTTTGTTTTATTCGCTTCATTATACAGGGCTGCCTTCGGGTGGCTCTGTGCGTTGTGCTCTGTCTTCTTTAGCTGAC
GTATTGAAATGTTACGTCAG

Product: host factor-I protein Hfg

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 92

Protein sequence:

>93_residues
MSKGHSLQDPFLNALRKERIPVSIFLVNGIKLQGQIESFDQYVVLLKNAVSQMVYKHAISTVVPARNPRATGNPAMAAGA
TAAPAADEGYGNQ

Sequences:

>Translated_93_residues
MSKGHSLQDPFLNALRKERIPVSIFLVNGIKLQGQIESFDQYVVLLKNAVSQMVYKHAISTVVPARNPRATGNPAMAAGA
TAAPAADEGYGNQ
>Mature_92_residues
SKGHSLQDPFLNALRKERIPVSIFLVNGIKLQGQIESFDQYVVLLKNAVSQMVYKHAISTVVPARNPRATGNPAMAAGAT
AAPAADEGYGNQ

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family

Homologues:

Organism=Escherichia coli, GI1790614, Length=66, Percent_Identity=86.3636363636364, Blast_Score=126, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): HFQ_ALCBS (Q0VME7)

Other databases:

- EMBL:   AM286690
- RefSeq:   YP_693923.1
- ProteinModelPortal:   Q0VME7
- SMR:   Q0VME7
- STRING:   Q0VME7
- GeneID:   4212196
- GenomeReviews:   AM286690_GR
- KEGG:   abo:ABO_2203
- eggNOG:   COG1923
- HOGENOM:   HBG645207
- OMA:   PYLNVLR
- PhylomeDB:   Q0VME7
- BioCyc:   ABOR393595:ABO_2203-MONOMER
- HAMAP:   MF_00436
- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163
- TIGRFAMs:   TIGR02383

Pfam domain/function: PF01423 LSM; SSF50182 Sm_like_riboprot

EC number: NA

Molecular weight: Translated: 9952; Mature: 9820

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKGHSLQDPFLNALRKERIPVSIFLVNGIKLQGQIESFDQYVVLLKNAVSQMVYKHAIS
CCCCCCCCCHHHHHHHHCCCCEEEEEECCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
TVVPARNPRATGNPAMAAGATAAPAADEGYGNQ
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKGHSLQDPFLNALRKERIPVSIFLVNGIKLQGQIESFDQYVVLLKNAVSQMVYKHAIS
CCCCCCCCHHHHHHHHCCCCEEEEEECCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
TVVPARNPRATGNPAMAAGATAAPAADEGYGNQ
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA