| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834873
Identifier: 110834873
GI number: 110834873
Start: 2298206
End: 2299411
Strand: Direct
Name: 110834873
Synonym: ABO_2012
Alternate gene names: NA
Gene position: 2298206-2299411 (Clockwise)
Preceding gene: 110834872
Following gene: 110834874
Centisome position: 73.66
GC content: 56.47
Gene sequence:
>1206_bases ATGGCCAGCCAATACAAAACCCGCTGCCCCCATTGTGCAGCCCAGTTCAAGATCACCGATGAACATTTGAAACAGGCGCG CGGTGCGGTTCGGTGCGGCTCATGCTTGCAGATTTTTCAGGCCAGCGATTACCTGATCGATCCTGCCGACGCCCAGCAGC AGCCCCAAAAAAATCGCTGGGCTGGCGCGCTGGACGGGTCCGACGTTGACAACAACCTGCCCAAAAATACTCAGACATTA GCCGATGACGATGACGATGCCGAGAGCCTGAGCATTCACGGGATGGAGCTCAGTGACTCATTCATGAATGTAGATGTAGA GGACACCGACCTCGGACTAGGCGAAGATTTCACCGACATGCAAGGCGCAGGCCGCGCCAACCACCATGAAAATGCGGATG AATCCTGGGCCGAAGCCCTACTGCAAGAATTGGAAGAAGACGAGCCAGCTGCTGCCAATACCACGTATGGAGCCCCTCCA TCACCCGGGACAGCCGCCAGCCACTCACCGTCACCAAAGCAGCAGACACCTAACGCTCCCAGCACAAAAACCAGCGAACA GTCACCGTCTCTATCAGAAGACGACGATAACAGCCTATTTGTCGGGCTGGATCTGTTTGCTGATGACCATTATGAAAAAC CAAGCTCCTCGGACAAACCGGTTCACGAACGCCACACTCATTTCCGCCAGCAGCGGGACTGGGGCGAGCTGATTAAATGG ACGTCCCTCTCGGGGATCGCCTTAGTGACATTGATTGGCCAGTACACCTTCTTCAACTTCGACGATCTGGCTCGCAGCCC ACAATGGCGCCCCTTGTACCAACAGGCCTGCGGGATACTTGGCTGCCAACTACCGAGTCGCTCCGACATCACCAAGGTGC GCGGCACCAACCTAGTGGTTCGCAGCCACCCGAACTATGCCAATGCGCTGATTGTTGACGCCATCCTGTTTAATGAAGCC AAGTACCCACAACCTTTCCCGGAACTGGAACTGAGCTTTAGCACCTTGAATGGCCGCCCTGTAGCCAGCCGCCGCTTTTT CCCCAAGGAATACCTGCAAGGAGAGCTACACGGCATGGGCATCATGCCCACACGCACGCCATTGCATATTTCTTTGGAAA TTGTGGATCCGGGCGAGCAGGCCGTGAGCTACAACCTTCGCCTGCTGCCGCCCCCCCAAGGCGGAGAACAGCTCTCCCAG CGCTAG
Upstream 100 bases:
>100_bases TAAATCATCTGCATGCGATGCTCGGATTGCTTCGTTGCCCGAACCCCAAAGCGTGCAACGTGCCACCTCTCTTCTTCCAA TAACAATTCAGGCGAAAGCC
Downstream 100 bases:
>100_bases CCGGCACCATCGCCAGCGCAAAATCGACAGCCCGTCGCCTGATGGCAGACGGGCCTTTCATCCCTAGCCTCCGATCTCTA TCATTGTTCCCCCTCTTAGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 401; Mature: 400
Protein sequence:
>401_residues MASQYKTRCPHCAAQFKITDEHLKQARGAVRCGSCLQIFQASDYLIDPADAQQQPQKNRWAGALDGSDVDNNLPKNTQTL ADDDDDAESLSIHGMELSDSFMNVDVEDTDLGLGEDFTDMQGAGRANHHENADESWAEALLQELEEDEPAAANTTYGAPP SPGTAASHSPSPKQQTPNAPSTKTSEQSPSLSEDDDNSLFVGLDLFADDHYEKPSSSDKPVHERHTHFRQQRDWGELIKW TSLSGIALVTLIGQYTFFNFDDLARSPQWRPLYQQACGILGCQLPSRSDITKVRGTNLVVRSHPNYANALIVDAILFNEA KYPQPFPELELSFSTLNGRPVASRRFFPKEYLQGELHGMGIMPTRTPLHISLEIVDPGEQAVSYNLRLLPPPQGGEQLSQ R
Sequences:
>Translated_401_residues MASQYKTRCPHCAAQFKITDEHLKQARGAVRCGSCLQIFQASDYLIDPADAQQQPQKNRWAGALDGSDVDNNLPKNTQTL ADDDDDAESLSIHGMELSDSFMNVDVEDTDLGLGEDFTDMQGAGRANHHENADESWAEALLQELEEDEPAAANTTYGAPP SPGTAASHSPSPKQQTPNAPSTKTSEQSPSLSEDDDNSLFVGLDLFADDHYEKPSSSDKPVHERHTHFRQQRDWGELIKW TSLSGIALVTLIGQYTFFNFDDLARSPQWRPLYQQACGILGCQLPSRSDITKVRGTNLVVRSHPNYANALIVDAILFNEA KYPQPFPELELSFSTLNGRPVASRRFFPKEYLQGELHGMGIMPTRTPLHISLEIVDPGEQAVSYNLRLLPPPQGGEQLSQ R >Mature_400_residues ASQYKTRCPHCAAQFKITDEHLKQARGAVRCGSCLQIFQASDYLIDPADAQQQPQKNRWAGALDGSDVDNNLPKNTQTLA DDDDDAESLSIHGMELSDSFMNVDVEDTDLGLGEDFTDMQGAGRANHHENADESWAEALLQELEEDEPAAANTTYGAPPS PGTAASHSPSPKQQTPNAPSTKTSEQSPSLSEDDDNSLFVGLDLFADDHYEKPSSSDKPVHERHTHFRQQRDWGELIKWT SLSGIALVTLIGQYTFFNFDDLARSPQWRPLYQQACGILGCQLPSRSDITKVRGTNLVVRSHPNYANALIVDAILFNEAK YPQPFPELELSFSTLNGRPVASRRFFPKEYLQGELHGMGIMPTRTPLHISLEIVDPGEQAVSYNLRLLPPPQGGEQLSQR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44390; Mature: 44259
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASQYKTRCPHCAAQFKITDEHLKQARGAVRCGSCLQIFQASDYLIDPADAQQQPQKNRW CCCCCCCCCCCCHHEEEECHHHHHHHHCHHHHHHHHHHHHCCCCEECCCCCCCCCCHHCC AGALDGSDVDNNLPKNTQTLADDDDDAESLSIHGMELSDSFMNVDVEDTDLGLGEDFTDM CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEECCHHEECCCCCCCCCCCCCCHHH QGAGRANHHENADESWAEALLQELEEDEPAAANTTYGAPPSPGTAASHSPSPKQQTPNAP CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC STKTSEQSPSLSEDDDNSLFVGLDLFADDHYEKPSSSDKPVHERHTHFRQQRDWGELIKW CCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHH TSLSGIALVTLIGQYTFFNFDDLARSPQWRPLYQQACGILGCQLPSRSDITKVRGTNLVV CCCCHHHHHHHHHHHHEECHHHHHCCCCCCHHHHHHHHHEECCCCCCCCCCEECCCEEEE RSHPNYANALIVDAILFNEAKYPQPFPELELSFSTLNGRPVASRRFFPKEYLQGELHGMG ECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCHHHHCCHHCCCC IMPTRTPLHISLEIVDPGEQAVSYNLRLLPPPQGGEQLSQR CCCCCCCEEEEEEEECCCCHHEEECCEEECCCCCHHHHHCC >Mature Secondary Structure ASQYKTRCPHCAAQFKITDEHLKQARGAVRCGSCLQIFQASDYLIDPADAQQQPQKNRW CCCCCCCCCCCHHEEEECHHHHHHHHCHHHHHHHHHHHHCCCCEECCCCCCCCCCHHCC AGALDGSDVDNNLPKNTQTLADDDDDAESLSIHGMELSDSFMNVDVEDTDLGLGEDFTDM CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEECCHHEECCCCCCCCCCCCCCHHH QGAGRANHHENADESWAEALLQELEEDEPAAANTTYGAPPSPGTAASHSPSPKQQTPNAP CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC STKTSEQSPSLSEDDDNSLFVGLDLFADDHYEKPSSSDKPVHERHTHFRQQRDWGELIKW CCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHH TSLSGIALVTLIGQYTFFNFDDLARSPQWRPLYQQACGILGCQLPSRSDITKVRGTNLVV CCCCHHHHHHHHHHHHEECHHHHHCCCCCCHHHHHHHHHEECCCCCCCCCCEECCCEEEE RSHPNYANALIVDAILFNEAKYPQPFPELELSFSTLNGRPVASRRFFPKEYLQGELHGMG ECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCHHHHCCHHCCCC IMPTRTPLHISLEIVDPGEQAVSYNLRLLPPPQGGEQLSQR CCCCCCCEEEEEEEECCCCHHEEECCEEECCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA