| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834807
Identifier: 110834807
GI number: 110834807
Start: 2224720
End: 2225331
Strand: Reverse
Name: 110834807
Synonym: ABO_1946
Alternate gene names: NA
Gene position: 2225331-2224720 (Counterclockwise)
Preceding gene: 110834833
Following gene: 110834800
Centisome position: 71.32
GC content: 58.82
Gene sequence:
>612_bases ATGATGCTGACGTACCTAGCGTTGCTGGTGTTGGTGGGCGCCAGCTTGCCGGCGGTGGTGCGCAGTTTTCTGCCGCCTTT ACCGCGCCGGATTACCGGCATTACGCCCCAGGCTGTGGTGGTGTTGGGCGCGGGGCGGCGCCAACGAAAAGGCCGAAGTT CGTTGAATACCCGAGGGCTGCGTCGGTTGAAATTGGCTGCAGAGCTGGCCCATGAGCACGGCTTGCCACTACTGGTCAGT GGCGGCGGTCAGCCCCCTAAGCACGATGATGAGCCCACAGAGGCAGACTTAATGGCGGAGCAAGCGCTGCGGCGCTGGCC GCGGCTGGATGTAATTAAAGAATTCCGTAGCCGAAATACTTGGGAGAACGCTTGTTATAGCTCTGAGCTGTTAGCTGATC GAGGCATAGATGAGGTGTTGTTGGTCAGTGATCGGGCCCACTTGCCCAGGGCCTTGCTGTGTTTCCAGAGCCAGGGTGTG TTGGCTCAGGCGGCGTGGAGCAAACGGTTGCCGAAGCAGGAATGGCTTCCCTCTGCGGGGGCCATATCTATGGTGCCGGA GATTTGGTATGAGTGGTTGGCCCTAGTGTGGTATCACGCTCGATTTTTGTAA
Upstream 100 bases:
>100_bases CTTGGATTTCTCAATACGCGGGTGCCCAGATGTGCAATCTCAATGATAAATACCTCGAGCAGGGGCGGCGGTGGGCCGTG GCAGCCGTGAGGGCCTGCCA
Downstream 100 bases:
>100_bases ACGCTAGGGTAAGAGGCGTGTCGCTTCTTGGTGCTATACGGCGTCAGGTGTCTTGGTGGCTCCGCCGAGCGCTTCAATGG CCTGATATTGGCTGAGAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 203; Mature: 203
Protein sequence:
>203_residues MMLTYLALLVLVGASLPAVVRSFLPPLPRRITGITPQAVVVLGAGRRQRKGRSSLNTRGLRRLKLAAELAHEHGLPLLVS GGGQPPKHDDEPTEADLMAEQALRRWPRLDVIKEFRSRNTWENACYSSELLADRGIDEVLLVSDRAHLPRALLCFQSQGV LAQAAWSKRLPKQEWLPSAGAISMVPEIWYEWLALVWYHARFL
Sequences:
>Translated_203_residues MMLTYLALLVLVGASLPAVVRSFLPPLPRRITGITPQAVVVLGAGRRQRKGRSSLNTRGLRRLKLAAELAHEHGLPLLVS GGGQPPKHDDEPTEADLMAEQALRRWPRLDVIKEFRSRNTWENACYSSELLADRGIDEVLLVSDRAHLPRALLCFQSQGV LAQAAWSKRLPKQEWLPSAGAISMVPEIWYEWLALVWYHARFL >Mature_203_residues MMLTYLALLVLVGASLPAVVRSFLPPLPRRITGITPQAVVVLGAGRRQRKGRSSLNTRGLRRLKLAAELAHEHGLPLLVS GGGQPPKHDDEPTEADLMAEQALRRWPRLDVIKEFRSRNTWENACYSSELLADRGIDEVLLVSDRAHLPRALLCFQSQGV LAQAAWSKRLPKQEWLPSAGAISMVPEIWYEWLALVWYHARFL
Specific function: Unknown
COG id: COG1434
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003848 - InterPro: IPR014729 [H]
Pfam domain/function: PF02698 DUF218 [H]
EC number: NA
Molecular weight: Translated: 22800; Mature: 22800
Theoretical pI: Translated: 10.31; Mature: 10.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMLTYLALLVLVGASLPAVVRSFLPPLPRRITGITPQAVVVLGAGRRQRKGRSSLNTRGL CHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHCCCCHHHEEEECCCCHHHCCHHHHHHHHH RRLKLAAELAHEHGLPLLVSGGGQPPKHDDEPTEADLMAEQALRRWPRLDVIKEFRSRNT HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCC WENACYSSELLADRGIDEVLLVSDRAHLPRALLCFQSQGVLAQAAWSKRLPKQEWLPSAG HHHHHHHHHHHHHCCCCCEEEECCCHHCHHHHHHHCCCCCHHHHHHHHCCCHHHCCCCCC AISMVPEIWYEWLALVWYHARFL HHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MMLTYLALLVLVGASLPAVVRSFLPPLPRRITGITPQAVVVLGAGRRQRKGRSSLNTRGL CHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHCCCCHHHEEEECCCCHHHCCHHHHHHHHH RRLKLAAELAHEHGLPLLVSGGGQPPKHDDEPTEADLMAEQALRRWPRLDVIKEFRSRNT HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCC WENACYSSELLADRGIDEVLLVSDRAHLPRALLCFQSQGVLAQAAWSKRLPKQEWLPSAG HHHHHHHHHHHHHCCCCCEEEECCCHHCHHHHHHHCCCCCHHHHHHHHCCCHHHCCCCCC AISMVPEIWYEWLALVWYHARFL HHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]