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The map label for this gene is 110834794

Identifier: 110834794

GI number: 110834794

Start: 2208928

End: 2209551

Strand: Reverse

Name: 110834794

Synonym: ABO_1933

Alternate gene names: NA

Gene position: 2209551-2208928 (Counterclockwise)

Preceding gene: 110834800

Following gene: 110834793

Centisome position: 70.82

GC content: 51.76

Gene sequence:

>624_bases
ATGGGCGCGGATTATAGCGCTGACTGCGGCAAACTGCGAACCGGAGGAATCATGGGAAAACTGCTGTATGTGCTGCCATT
ACTGGTAGCGTTGATGTTGGCTGGCTGTGGCAAGCAGGAAAGCGATCTACCGGTGAATACTCGTTTGGGCGGTGATTTCA
CCCTGACAGACCAGAATGGTGCGCCTTTTCAGGCAGAAAAGTTGAAGGGTAAAGTGTCGATTCTCTTTTTTGGTTACACC
CATTGCCCGGATATTTGCCCGGCGGTGCTTGCCCAAGTGGCCCAAGTTTATCGCCATCTGGAAGAGGACGGGGTAGCTGA
TCAGGTTCAGCCGGTGTTTATTACTTTTGATCCTGAGCGCGATACAGTGGCTCATCTGAAGGAATATCTACCCTGGTTCA
AGGCAGATATGATTGGCCTGACCGGTAGCCTGGAACAGATTCGCGAGGTTGCCAAGCAGTATGGGGTGGTCTTCATCAAG
GACCAAGAAGCCGGGGAGCAGGGCTACCTGTTTACCCACAGCGACTACATATACCTGCTGGATGAACAGGCGCGTGTGCG
CAAACTGTACCCGGCGGATTTCAAGATTGACGAGGTGGTAACGGATGTTGAATCACTTTTATAA

Upstream 100 bases:

>100_bases
TCCACCATACGAGTGGAGTCATACTCGTTCATCTGGCAGCCGTGGGTCTGGATAAACAGCTTACGTGCCATGGGTTGCCT
AACCGTCAAATAGAGTGAAA

Downstream 100 bases:

>100_bases
AAAAACGTGCCAGGGGGCTGCCCTAGCAGCATTTCTGTGCTCTGGCATCGTCCATGCCGATGTGAGTATTTCAGAGGGGT
GGCTGAGGGCTGTGCCACCG

Product: Sco1/SenC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MGADYSADCGKLRTGGIMGKLLYVLPLLVALMLAGCGKQESDLPVNTRLGGDFTLTDQNGAPFQAEKLKGKVSILFFGYT
HCPDICPAVLAQVAQVYRHLEEDGVADQVQPVFITFDPERDTVAHLKEYLPWFKADMIGLTGSLEQIREVAKQYGVVFIK
DQEAGEQGYLFTHSDYIYLLDEQARVRKLYPADFKIDEVVTDVESLL

Sequences:

>Translated_207_residues
MGADYSADCGKLRTGGIMGKLLYVLPLLVALMLAGCGKQESDLPVNTRLGGDFTLTDQNGAPFQAEKLKGKVSILFFGYT
HCPDICPAVLAQVAQVYRHLEEDGVADQVQPVFITFDPERDTVAHLKEYLPWFKADMIGLTGSLEQIREVAKQYGVVFIK
DQEAGEQGYLFTHSDYIYLLDEQARVRKLYPADFKIDEVVTDVESLL
>Mature_206_residues
GADYSADCGKLRTGGIMGKLLYVLPLLVALMLAGCGKQESDLPVNTRLGGDFTLTDQNGAPFQAEKLKGKVSILFFGYTH
CPDICPAVLAQVAQVYRHLEEDGVADQVQPVFITFDPERDTVAHLKEYLPWFKADMIGLTGSLEQIREVAKQYGVVFIKD
QEAGEQGYLFTHSDYIYLLDEQARVRKLYPADFKIDEVVTDVESLL

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=131, Percent_Identity=41.2213740458015, Blast_Score=108, Evalue=3e-24,
Organism=Homo sapiens, GI281182722, Length=131, Percent_Identity=41.2213740458015, Blast_Score=108, Evalue=3e-24,
Organism=Homo sapiens, GI281182716, Length=131, Percent_Identity=41.2213740458015, Blast_Score=108, Evalue=3e-24,
Organism=Homo sapiens, GI153791313, Length=131, Percent_Identity=41.2213740458015, Blast_Score=108, Evalue=3e-24,
Organism=Homo sapiens, GI4759068, Length=132, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17531419, Length=195, Percent_Identity=30.7692307692308, Blast_Score=110, Evalue=6e-25,
Organism=Saccharomyces cerevisiae, GI6319498, Length=138, Percent_Identity=47.1014492753623, Blast_Score=124, Evalue=9e-30,
Organism=Saccharomyces cerevisiae, GI6319511, Length=163, Percent_Identity=37.4233128834356, Blast_Score=104, Evalue=9e-24,
Organism=Drosophila melanogaster, GI19920710, Length=155, Percent_Identity=35.4838709677419, Blast_Score=110, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23030; Mature: 22898

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGADYSADCGKLRTGGIMGKLLYVLPLLVALMLAGCGKQESDLPVNTRLGGDFTLTDQNG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCEEEEECCCC
APFQAEKLKGKVSILFFGYTHCPDICPAVLAQVAQVYRHLEEDGVADQVQPVFITFDPER
CCCHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
DTVAHLKEYLPWFKADMIGLTGSLEQIREVAKQYGVVFIKDQEAGEQGYLFTHSDYIYLL
CHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCCEEEEEECCCCCCCEEEEECCEEEEE
DEQARVRKLYPADFKIDEVVTDVESLL
CCCHHHHHCCCCCCCHHHHHHHHHHHC
>Mature Secondary Structure 
GADYSADCGKLRTGGIMGKLLYVLPLLVALMLAGCGKQESDLPVNTRLGGDFTLTDQNG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCEEEEECCCC
APFQAEKLKGKVSILFFGYTHCPDICPAVLAQVAQVYRHLEEDGVADQVQPVFITFDPER
CCCHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
DTVAHLKEYLPWFKADMIGLTGSLEQIREVAKQYGVVFIKDQEAGEQGYLFTHSDYIYLL
CHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCCEEEEEECCCCCCCEEEEECCEEEEE
DEQARVRKLYPADFKIDEVVTDVESLL
CCCHHHHHCCCCCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA