| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834777
Identifier: 110834777
GI number: 110834777
Start: 2193493
End: 2194284
Strand: Direct
Name: 110834777
Synonym: ABO_1916
Alternate gene names: NA
Gene position: 2193493-2194284 (Clockwise)
Preceding gene: 110834774
Following gene: 110834778
Centisome position: 70.3
GC content: 52.9
Gene sequence:
>792_bases ATGAGCTCGTGTTATATGATCACCCCCATTCCAAAAATAACGGACAAGGATTCCTCGCTTCCTATGGACAGGCTTCGACC TTTTGGCCTTCTTTGGCTTTTGCTTGCATTCTCTACGCTTTGCTCACCGGCATTCAGTAATGAAGATCAGGATTGGACCC TGGTCAGTGACCGCAATGATATTCAGGTGTATATGAAGCACCGGGATGAGTCACGCCTGAAGACGTTTCGTGGCGTCACC CGCTTCCCCCTGAAAGACGAGTACTCCCTGGTCGCACTGCTCAACGATTACCCCTCGTATCCTAAATGGCTGCATTTTGT CGATAGTGCCGAGGAGTTCGGCCGCGCCAACCCCCTCGACCGTCAGTTACGCTTCACCACTCAACTGCCTTGGCCGCTGG CCGACCGAGAAGCCGTATTACGCGCAAAAGTGACCCAAGTGCTGGATCCTAATCCCAATTCGGTGAAAATCACCCTGATC AACCAACCGGATGCCCTGCCCCCCACCAAGAACTATATCCGCTTTCCTGAAATGACCGGGATACTAGCCTTTAGCCGCCT GAGCAACCACCAAATAGAAATGACCTATGAACTGATTCTGGACCCGGGCGGCTACATCCCCGCCTGGATTGCCAATATTC TGCTACGCGATGCGCCTTACTTCACGCTAGAACGACTTCGCCGTATCATCAACAAACCGGAATACCAGAATCATTATTAC GATTACATTGACCTTAATGGCCCGGGCAGGCTTGTAGACGCGACGCCTCAGGCCGCACCAGCGCCCCACTGA
Upstream 100 bases:
>100_bases GCCGTTGATACATATTTGCTACACCGACTGTCCGATTACGCGCAGAAGATACACTAGAGAGTGATCAAAATGTATTCAGC GGGACAAGGATAATGTCATA
Downstream 100 bases:
>100_bases CCGACCAAAGCGGCATCATCCAAAGGTAACCAACGTAAATGCTGGCCTGTCATTTTCGGCCAGACCTCCGCTACCATAGC ACTCAGTTTCTGTACGAATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MSSCYMITPIPKITDKDSSLPMDRLRPFGLLWLLLAFSTLCSPAFSNEDQDWTLVSDRNDIQVYMKHRDESRLKTFRGVT RFPLKDEYSLVALLNDYPSYPKWLHFVDSAEEFGRANPLDRQLRFTTQLPWPLADREAVLRAKVTQVLDPNPNSVKITLI NQPDALPPTKNYIRFPEMTGILAFSRLSNHQIEMTYELILDPGGYIPAWIANILLRDAPYFTLERLRRIINKPEYQNHYY DYIDLNGPGRLVDATPQAAPAPH
Sequences:
>Translated_263_residues MSSCYMITPIPKITDKDSSLPMDRLRPFGLLWLLLAFSTLCSPAFSNEDQDWTLVSDRNDIQVYMKHRDESRLKTFRGVT RFPLKDEYSLVALLNDYPSYPKWLHFVDSAEEFGRANPLDRQLRFTTQLPWPLADREAVLRAKVTQVLDPNPNSVKITLI NQPDALPPTKNYIRFPEMTGILAFSRLSNHQIEMTYELILDPGGYIPAWIANILLRDAPYFTLERLRRIINKPEYQNHYY DYIDLNGPGRLVDATPQAAPAPH >Mature_262_residues SSCYMITPIPKITDKDSSLPMDRLRPFGLLWLLLAFSTLCSPAFSNEDQDWTLVSDRNDIQVYMKHRDESRLKTFRGVTR FPLKDEYSLVALLNDYPSYPKWLHFVDSAEEFGRANPLDRQLRFTTQLPWPLADREAVLRAKVTQVLDPNPNSVKITLIN QPDALPPTKNYIRFPEMTGILAFSRLSNHQIEMTYELILDPGGYIPAWIANILLRDAPYFTLERLRRIINKPEYQNHYYD YIDLNGPGRLVDATPQAAPAPH
Specific function: May play a role in the interaction of the bacterium with animal cells [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 START domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002913 [H]
Pfam domain/function: PF01852 START [H]
EC number: NA
Molecular weight: Translated: 30428; Mature: 30297
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSCYMITPIPKITDKDSSLPMDRLRPFGLLWLLLAFSTLCSPAFSNEDQDWTLVSDRND CCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC IQVYMKHRDESRLKTFRGVTRFPLKDEYSLVALLNDYPSYPKWLHFVDSAEEFGRANPLD EEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC RQLRFTTQLPWPLADREAVLRAKVTQVLDPNPNSVKITLINQPDALPPTKNYIRFPEMTG HHEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCEEECCCHHH ILAFSRLSNHQIEMTYELILDPGGYIPAWIANILLRDAPYFTLERLRRIINKPEYQNHYY HHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCE DYIDLNGPGRLVDATPQAAPAPH EEEEECCCCCEEECCCCCCCCCC >Mature Secondary Structure SSCYMITPIPKITDKDSSLPMDRLRPFGLLWLLLAFSTLCSPAFSNEDQDWTLVSDRND CCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC IQVYMKHRDESRLKTFRGVTRFPLKDEYSLVALLNDYPSYPKWLHFVDSAEEFGRANPLD EEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC RQLRFTTQLPWPLADREAVLRAKVTQVLDPNPNSVKITLINQPDALPPTKNYIRFPEMTG HHEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCEEECCCHHH ILAFSRLSNHQIEMTYELILDPGGYIPAWIANILLRDAPYFTLERLRRIINKPEYQNHYY HHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCE DYIDLNGPGRLVDATPQAAPAPH EEEEECCCCCEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043; 11276083 [H]