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The map label for this gene is rbgA [H]

Identifier: 110834685

GI number: 110834685

Start: 2084314

End: 2085363

Strand: Direct

Name: rbgA [H]

Synonym: ABO_1824

Alternate gene names: 110834685

Gene position: 2084314-2085363 (Clockwise)

Preceding gene: 110834681

Following gene: 110834695

Centisome position: 66.8

GC content: 57.62

Gene sequence:

>1050_bases
ATGTTAATAGCCCGCAGGGCCCAGCCCCAAGCAACCGGCAATACTCCCCCGCTCAGCTGGTTTATACTGCCGTTTCATTC
AATACAAACGATACGGCGCCCCATGAGCATCAACTGGTTCCCCGGCCACATGAACAAGGCCATCCGCGAAATTCGCGACA
TTCTCCCCAAGGTGGACCTGGTCATCGAAGTGGTAGACGCCCGCTTACCCTATAGCAGTGCCAACCCGGTAATCGAACAA
TTTCGCGCCGACAAGCCCTGCCTGAAACTGCTCAGTAAAAGCGACCTGGCCGATCCCGCCATTACTCAACAATGGCTGGC
TCATCTTGAACAAGATCCAACCGTCCGCGCCCTGGCCATCACCACCGAAAAGCCGGAACAGATCCGCAAGCTGCTAGACA
CCGCCCTGAAAATGGCTGGTAAACGCGAAGACCGGGCCACCAGCGTCACCGCCCTGATCACCGGCATTCCCAACGTGGGC
AAATCCACCCTGATCAACAATCTGGCCAGCCGTATCATTGCCAAGGCAGGTAACGAGCCCGCCGTCACCCAGCGCCAACA
GCGCATCGACCTGCGCAACGGCCTTATCCTGATCGACTCCCCCGGCATCCTTTGGCCTAAAATTGAAAACCCGGACAGCG
GCTACCGCCTGGCCCTCTCCGGCGCCATCAAAGCCACCGCCATGCAAGAAGACGACGTAGCCTTGTTTGCCGCCGAGTAT
TTCATGCAAGCCTATCCAGAATTAATGAAGGAGCGCTTCAAACTCGACACGCTGCCCGATGAAGGCGTGCCGTTTCTGGA
AACCATCGGCAAGCAACGCGGCTGTATCGGCAAAGGCGGCCACGTGGACTTCGACCGCACCGCCGCCCTGCTCATCAACG
AATACCGCAGCGGCAAACTCGGCCCCATCACCCTGGAAACCCCGGCCATGGCCGAGAAAGAGCATGTGAAAGTGGCAGAG
ATACGCAGGCTAAAAGAAGAGGAAAAAGAGGCGAAGAAGAAAGCCAGGAAGGCGGCGTATAAGGCGAAGGGCAGCACCGG
AAGTAACTAA

Upstream 100 bases:

>100_bases
GATAAAGACGCCTTCACCCTTTTCAGGCAAATCGGGAAAATCGAAATAGCGCAGAAAGCCCACGATATTTTCAAAAACAC
GCATTAAGAATGGCTTGGCA

Downstream 100 bases:

>100_bases
ATTACCTGCCTATCTTCGCCTCCCACCAGCAAAACCAGCCCCTTCATGGGCCTGATCATTAAGCAGTTCGTGTTCAGCAA
GGCGCCGAGCCCTGTGTCAA

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MLIARRAQPQATGNTPPLSWFILPFHSIQTIRRPMSINWFPGHMNKAIREIRDILPKVDLVIEVVDARLPYSSANPVIEQ
FRADKPCLKLLSKSDLADPAITQQWLAHLEQDPTVRALAITTEKPEQIRKLLDTALKMAGKREDRATSVTALITGIPNVG
KSTLINNLASRIIAKAGNEPAVTQRQQRIDLRNGLILIDSPGILWPKIENPDSGYRLALSGAIKATAMQEDDVALFAAEY
FMQAYPELMKERFKLDTLPDEGVPFLETIGKQRGCIGKGGHVDFDRTAALLINEYRSGKLGPITLETPAMAEKEHVKVAE
IRRLKEEEKEAKKKARKAAYKAKGSTGSN

Sequences:

>Translated_349_residues
MLIARRAQPQATGNTPPLSWFILPFHSIQTIRRPMSINWFPGHMNKAIREIRDILPKVDLVIEVVDARLPYSSANPVIEQ
FRADKPCLKLLSKSDLADPAITQQWLAHLEQDPTVRALAITTEKPEQIRKLLDTALKMAGKREDRATSVTALITGIPNVG
KSTLINNLASRIIAKAGNEPAVTQRQQRIDLRNGLILIDSPGILWPKIENPDSGYRLALSGAIKATAMQEDDVALFAAEY
FMQAYPELMKERFKLDTLPDEGVPFLETIGKQRGCIGKGGHVDFDRTAALLINEYRSGKLGPITLETPAMAEKEHVKVAE
IRRLKEEEKEAKKKARKAAYKAKGSTGSN
>Mature_349_residues
MLIARRAQPQATGNTPPLSWFILPFHSIQTIRRPMSINWFPGHMNKAIREIRDILPKVDLVIEVVDARLPYSSANPVIEQ
FRADKPCLKLLSKSDLADPAITQQWLAHLEQDPTVRALAITTEKPEQIRKLLDTALKMAGKREDRATSVTALITGIPNVG
KSTLINNLASRIIAKAGNEPAVTQRQQRIDLRNGLILIDSPGILWPKIENPDSGYRLALSGAIKATAMQEDDVALFAAEY
FMQAYPELMKERFKLDTLPDEGVPFLETIGKQRGCIGKGGHVDFDRTAALLINEYRSGKLGPITLETPAMAEKEHVKVAE
IRRLKEEEKEAKKKARKAAYKAKGSTGSN

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=208, Percent_Identity=33.6538461538462, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI7019419, Length=271, Percent_Identity=26.9372693726937, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI45593130, Length=279, Percent_Identity=24.7311827956989, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI45643129, Length=279, Percent_Identity=24.7311827956989, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI45643127, Length=279, Percent_Identity=24.7311827956989, Blast_Score=68, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193211047, Length=309, Percent_Identity=27.5080906148867, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17534827, Length=272, Percent_Identity=27.9411764705882, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI32563985, Length=287, Percent_Identity=25.7839721254355, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71990926, Length=287, Percent_Identity=25.7839721254355, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI32563983, Length=287, Percent_Identity=25.7839721254355, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI25143545, Length=324, Percent_Identity=24.3827160493827, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI115535155, Length=288, Percent_Identity=24.6527777777778, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6320842, Length=298, Percent_Identity=27.8523489932886, Blast_Score=84, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6324381, Length=263, Percent_Identity=22.4334600760456, Blast_Score=77, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6323744, Length=234, Percent_Identity=28.2051282051282, Blast_Score=76, Evalue=7e-15,
Organism=Drosophila melanogaster, GI85815858, Length=317, Percent_Identity=29.0220820189274, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI19922460, Length=265, Percent_Identity=27.5471698113208, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI28572990, Length=305, Percent_Identity=25.5737704918033, Blast_Score=73, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 38800; Mature: 38800

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIARRAQPQATGNTPPLSWFILPFHSIQTIRRPMSINWFPGHMNKAIREIRDILPKVDL
CCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
VIEVVDARLPYSSANPVIEQFRADKPCLKLLSKSDLADPAITQQWLAHLEQDPTVRALAI
HHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEE
TTEKPEQIRKLLDTALKMAGKREDRATSVTALITGIPNVGKSTLINNLASRIIAKAGNEP
ECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
AVTQRQQRIDLRNGLILIDSPGILWPKIENPDSGYRLALSGAIKATAMQEDDVALFAAEY
HHHHHHHHHHHHCCEEEEECCCEECCCCCCCCCCCEEEEECCHHEHCCCCCCHHHHHHHH
FMQAYPELMKERFKLDTLPDEGVPFLETIGKQRGCIGKGGHVDFDRTAALLINEYRSGKL
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
GPITLETPAMAEKEHVKVAEIRRLKEEEKEAKKKARKAAYKAKGSTGSN
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLIARRAQPQATGNTPPLSWFILPFHSIQTIRRPMSINWFPGHMNKAIREIRDILPKVDL
CCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
VIEVVDARLPYSSANPVIEQFRADKPCLKLLSKSDLADPAITQQWLAHLEQDPTVRALAI
HHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEE
TTEKPEQIRKLLDTALKMAGKREDRATSVTALITGIPNVGKSTLINNLASRIIAKAGNEP
ECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
AVTQRQQRIDLRNGLILIDSPGILWPKIENPDSGYRLALSGAIKATAMQEDDVALFAAEY
HHHHHHHHHHHHCCEEEEECCCEECCCCCCCCCCCEEEEECCHHEHCCCCCCHHHHHHHH
FMQAYPELMKERFKLDTLPDEGVPFLETIGKQRGCIGKGGHVDFDRTAALLINEYRSGKL
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
GPITLETPAMAEKEHVKVAEIRRLKEEEKEAKKKARKAAYKAKGSTGSN
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]