| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834695
Identifier: 110834695
GI number: 110834695
Start: 2103133
End: 2104020
Strand: Direct
Name: 110834695
Synonym: ABO_1834
Alternate gene names: NA
Gene position: 2103133-2104020 (Clockwise)
Preceding gene: 110834685
Following gene: 110834703
Centisome position: 67.41
GC content: 56.87
Gene sequence:
>888_bases ATGGCACGGACTGCAGGTAAAAACGCAGCAGACTGGCCGCTGCGCTGGGATCTGTTATTGCGCTACAGACTGATCGAGGT CATCGCGCTCTGGGAGGGAAGACTGACGACGAACCACTTGCAGCGAGCTTTTGGCATCGGCCGGCAGCAGGCCAGCAAGG ATATTAACCACTATCTTGCTGAATATGCGCCTGGCAACCTGGATTACGACCGCTCCCTGAAGGGCTACAAGCCCGCCAGC ACCTTCAAGCCGGTATTCACTCGGGGCGTGGCCGACGAATACCTGCAGATGATGCATGCCAGGGAGGATCTGAGCTGTGC TTTTGAAACTCTGGATGTACGCGAACTCAATACCGAAGTGCTGCTTCCTCCTTCCCGTGACCTACGCCCTAGTGTGCTGC GCCCGATTCTTCAAGCTTGCCGAGACAATCTACGTGTGGAAATCCAGTACGCCTCCCTGAGTAATCCGGAACCGGAATAT CGAGTCATCCAGCCCCACACCGTGGTGCACAGTGGTATGCGCTGGCATGTTCGTGCCTGGTGCGAGAAAAATAGTGACTA TCGGGATTTCGTATTAAGCCGGATTCAAGATGAACCCGAGCTGACGCTTCCCGGCGAACACCACGCTGAACAGGATGATG CCTGGCAAGAGCGGCTCACTCTGCAGGTCACCCCAGATCCTCGCCTATCTCCGGCTCAGCAGGCGGTGATTGCTCTGGAT TACGGCATGACCGATGGGGCGCTGACTATTGAGTGTCGGGCGGCCATGGCCAATTACATTGTGCAGCTCCTAAGACTGGA TGGACCGCAGCACCGAGACCCCGAGGCCCAGCAGGTGGTGCTGGCCAACAGGGATGAGGTCAAAGGATGGCTTTGGGGAA CGAATTAA
Upstream 100 bases:
>100_bases CATGATGACACCCAAAGGATATTTACTTATTATTGTCATGTCGATACTGGCTACATTAACACGTCACTTTTTGGCACATA TCGCTTTTTGGAGCATATCC
Downstream 100 bases:
>100_bases CTCTCGTACACTTCAATCTTTTCTCTTAAACGGGAAGATTTCATCAAAGAAAGAAAAAGCGGCAACAAACAAAAGATGAC ATAGCTGAAGGTTTGATTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 295; Mature: 294
Protein sequence:
>295_residues MARTAGKNAADWPLRWDLLLRYRLIEVIALWEGRLTTNHLQRAFGIGRQQASKDINHYLAEYAPGNLDYDRSLKGYKPAS TFKPVFTRGVADEYLQMMHAREDLSCAFETLDVRELNTEVLLPPSRDLRPSVLRPILQACRDNLRVEIQYASLSNPEPEY RVIQPHTVVHSGMRWHVRAWCEKNSDYRDFVLSRIQDEPELTLPGEHHAEQDDAWQERLTLQVTPDPRLSPAQQAVIALD YGMTDGALTIECRAAMANYIVQLLRLDGPQHRDPEAQQVVLANRDEVKGWLWGTN
Sequences:
>Translated_295_residues MARTAGKNAADWPLRWDLLLRYRLIEVIALWEGRLTTNHLQRAFGIGRQQASKDINHYLAEYAPGNLDYDRSLKGYKPAS TFKPVFTRGVADEYLQMMHAREDLSCAFETLDVRELNTEVLLPPSRDLRPSVLRPILQACRDNLRVEIQYASLSNPEPEY RVIQPHTVVHSGMRWHVRAWCEKNSDYRDFVLSRIQDEPELTLPGEHHAEQDDAWQERLTLQVTPDPRLSPAQQAVIALD YGMTDGALTIECRAAMANYIVQLLRLDGPQHRDPEAQQVVLANRDEVKGWLWGTN >Mature_294_residues ARTAGKNAADWPLRWDLLLRYRLIEVIALWEGRLTTNHLQRAFGIGRQQASKDINHYLAEYAPGNLDYDRSLKGYKPAST FKPVFTRGVADEYLQMMHAREDLSCAFETLDVRELNTEVLLPPSRDLRPSVLRPILQACRDNLRVEIQYASLSNPEPEYR VIQPHTVVHSGMRWHVRAWCEKNSDYRDFVLSRIQDEPELTLPGEHHAEQDDAWQERLTLQVTPDPRLSPAQQAVIALDY GMTDGALTIECRAAMANYIVQLLRLDGPQHRDPEAQQVVLANRDEVKGWLWGTN
Specific function: Unknown
COG id: COG2378
COG function: function code K; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33936; Mature: 33805
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARTAGKNAADWPLRWDLLLRYRLIEVIALWEGRLTTNHLQRAFGIGRQQASKDINHYLA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH EYAPGNLDYDRSLKGYKPASTFKPVFTRGVADEYLQMMHAREDLSCAFETLDVRELNTEV HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE LLPPSRDLRPSVLRPILQACRDNLRVEIQYASLSNPEPEYRVIQPHTVVHSGMRWHVRAW ECCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEECCHHHHHCCCEEEEEHH CEKNSDYRDFVLSRIQDEPELTLPGEHHAEQDDAWQERLTLQVTPDPRLSPAQQAVIALD HHCCCCHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHCEEEEECCCCCCCHHHHEEEEEE YGMTDGALTIECRAAMANYIVQLLRLDGPQHRDPEAQQVVLANRDEVKGWLWGTN CCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCCCCEEEECCC >Mature Secondary Structure ARTAGKNAADWPLRWDLLLRYRLIEVIALWEGRLTTNHLQRAFGIGRQQASKDINHYLA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH EYAPGNLDYDRSLKGYKPASTFKPVFTRGVADEYLQMMHAREDLSCAFETLDVRELNTEV HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE LLPPSRDLRPSVLRPILQACRDNLRVEIQYASLSNPEPEYRVIQPHTVVHSGMRWHVRAW ECCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEECCHHHHHCCCEEEEEHH CEKNSDYRDFVLSRIQDEPELTLPGEHHAEQDDAWQERLTLQVTPDPRLSPAQQAVIALD HHCCCCHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHCEEEEECCCCCCCHHHHEEEEEE YGMTDGALTIECRAAMANYIVQLLRLDGPQHRDPEAQQVVLANRDEVKGWLWGTN CCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA