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The map label for this gene is recD [H]

Identifier: 110834681

GI number: 110834681

Start: 2078553

End: 2080490

Strand: Direct

Name: recD [H]

Synonym: ABO_1820

Alternate gene names: 110834681

Gene position: 2078553-2080490 (Clockwise)

Preceding gene: 110834680

Following gene: 110834685

Centisome position: 66.62

GC content: 59.75

Gene sequence:

>1938_bases
ATGCAAGCTGACCTGTTCTCCGCCCTCACCTGGGAAGACGCGCTAATCCTGCTGCGCGACAACAATTTGCTGCGCGATCT
GGACGTGGCCATTGCCCGTTTCCTGAAACAACAATGCCCGCAAGCAAGCTACGAGGTGTTATTACTCGCCGCCTTCACCA
GCAACCAGCAAGCCAGTGGCCACCTGTGTCTGGATCTAAAAAACCGCGCGTTAGCCACCCAGCTTTGGGGCACCAACCCG
CCGCCGGAGCTGGTCGCCCTGTTACCCGGCGAGCCCAATAACTGGCTCCATGAACTGCAGCAAAGCACCTTGGTCAGCCA
AAACGGCAGCACACCATTGGTACTGGACGGCAGCCGCCTTTACCTGCGCCGCAACTGGGCCCGGGAAGTGGCCGTGGCCG
ACGCCATCGAGCAAAAACTGGCCACCGCCAATCCACTGCCTGAAGCCCCCCTGCGCGAAGCCCTGGCCAAATTATTTCCC
GGTTCCAACAACCACACCGACTGGCAACAGGTGGCTTGTGCTTTGGCCAGCCGCAGCGGGATCAGCATCATTACCGGCGG
CCCCGGCACCGGCAAAACCACCACAGTGGTACGCTTGTTAGGCCTGCTGCAAAGCCTGGCAATGGCCGATAACCAGCGCC
TGCGTATTCGTCTCGCCGCTCCCACCGGCAAGGCTGCGGCACGGCTCACCGAATCCATCGGTGAGCAGGTAGGAAAACTC
CACGTGGACGCCACCGTGCGCGATGCCATTCCCACCGAAGTGACCACACTGCACCGCCTGCTCGGCACCCGGCCAGACAG
CCGTCACTTTCGCCATCATGGGGATAATCCACTGCACGCAGATCTGGTGGTGGTGGATGAAGCCAGCATGATCGACATGG
ACATGATGGCTTGCCTGTTGGAAGCCCTGAGCCCACACACCCGGTTGATTCTACTCGGCGATAAGGACCAACTGGCCAGC
GTGGAAGCCGGTGCGGTGATGGGTGACTTGTGCCGTCATGCCCACGAAGGTCGCTACAAGCAACGTACTATCGAATTCGT
TAACAATACCTGTGGCGCGGATATCAGTGACTATCAGGAGACAGACCAGAACCCAGGCAACGCCCTAGCGCAACAAACCG
CCATGTTGCGCACCAACTGGCGCTCCAAGGACAGCCCCGGCATCGGCGAACTGGCGCGGGCAGTAAACGAAGAAAACCTG
CCGCAGGTGCGCGAGAGCTTTCAACGCTACCCGGACAGCCTGTACCGCCAACACCTGAGCAGCGATAGCCAGCAACTGGA
AACCCTGCTGCTCAACGGCAGTAATGGTCACACAGGCCTACGGGCACTGTTTAGCGCGGTGGCAACACCACCTGCACAGC
GACACGATTTCGATGATTGGGCCGCCGGCCTGCTCAAACAGCTCACCCACCAGCAACTGCTCAGCGGCCTGCGCAGCGGT
CCTTTCGGGGTAGAACAACTCAATCAACGCATCACCCACCACCTACAACAACAGGACCTGGCGCCGGAACGGGAATGGTA
CCCCGGTCGCCCGGTGATGATGACGCGCAACGATTATCAGCTAGGGTTAATGAATGGCGATGTGGGACTGACGCTGCCCT
TACTTGAGACCAGGAAGGGTACCGCGGAGCTGCTGTTAAGAGTGGCGTTCCAGTTGCCGGACGGGCGCATCAAGTGGGTA
TTACCCAGCCGCCTGGACGGGGTAGAAACCGTCTACGCCATGACCGTACACAAATCCCAAGGCTCGGAATTCAAGCATAC
CCTGCTGGTATTACCCGATGCCCCCCACCCCCTGCTTACCCGAGAGTTAATCTACACTGCCGTCACCCGGGCTCGGGATC
GCTTCACCTTGCTGGAATTCGGCAAATCGGCCGTGCTGGACAGTGCGGTGAAAAAGCGGACTTGGCGGGCATCGGGGTTA
GCAGAGAGGTTGAGTTAA

Upstream 100 bases:

>100_bases
ACCACACACAAATCGCAACATAGAGCCTGCTCGACAGGCTCGAGCCCTTCTCGCGTTCCAACGATCAACGTTCAACCTCC
CACCGGGTTGGAGGCATCCT

Downstream 100 bases:

>100_bases
AAGTGTAACGTTGAAAAGCGCGAAATAGAGGCCTACCACACGGCGGGCGTGTACCGATGTACCCGCACTGGCCAGAGAGA
TTTTCTCCGGCCAGAGCAAA

Product: exodeoxyribonuclease V subunit alpha

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 645; Mature: 645

Protein sequence:

>645_residues
MQADLFSALTWEDALILLRDNNLLRDLDVAIARFLKQQCPQASYEVLLLAAFTSNQQASGHLCLDLKNRALATQLWGTNP
PPELVALLPGEPNNWLHELQQSTLVSQNGSTPLVLDGSRLYLRRNWAREVAVADAIEQKLATANPLPEAPLREALAKLFP
GSNNHTDWQQVACALASRSGISIITGGPGTGKTTTVVRLLGLLQSLAMADNQRLRIRLAAPTGKAAARLTESIGEQVGKL
HVDATVRDAIPTEVTTLHRLLGTRPDSRHFRHHGDNPLHADLVVVDEASMIDMDMMACLLEALSPHTRLILLGDKDQLAS
VEAGAVMGDLCRHAHEGRYKQRTIEFVNNTCGADISDYQETDQNPGNALAQQTAMLRTNWRSKDSPGIGELARAVNEENL
PQVRESFQRYPDSLYRQHLSSDSQQLETLLLNGSNGHTGLRALFSAVATPPAQRHDFDDWAAGLLKQLTHQQLLSGLRSG
PFGVEQLNQRITHHLQQQDLAPEREWYPGRPVMMTRNDYQLGLMNGDVGLTLPLLETRKGTAELLLRVAFQLPDGRIKWV
LPSRLDGVETVYAMTVHKSQGSEFKHTLLVLPDAPHPLLTRELIYTAVTRARDRFTLLEFGKSAVLDSAVKKRTWRASGL
AERLS

Sequences:

>Translated_645_residues
MQADLFSALTWEDALILLRDNNLLRDLDVAIARFLKQQCPQASYEVLLLAAFTSNQQASGHLCLDLKNRALATQLWGTNP
PPELVALLPGEPNNWLHELQQSTLVSQNGSTPLVLDGSRLYLRRNWAREVAVADAIEQKLATANPLPEAPLREALAKLFP
GSNNHTDWQQVACALASRSGISIITGGPGTGKTTTVVRLLGLLQSLAMADNQRLRIRLAAPTGKAAARLTESIGEQVGKL
HVDATVRDAIPTEVTTLHRLLGTRPDSRHFRHHGDNPLHADLVVVDEASMIDMDMMACLLEALSPHTRLILLGDKDQLAS
VEAGAVMGDLCRHAHEGRYKQRTIEFVNNTCGADISDYQETDQNPGNALAQQTAMLRTNWRSKDSPGIGELARAVNEENL
PQVRESFQRYPDSLYRQHLSSDSQQLETLLLNGSNGHTGLRALFSAVATPPAQRHDFDDWAAGLLKQLTHQQLLSGLRSG
PFGVEQLNQRITHHLQQQDLAPEREWYPGRPVMMTRNDYQLGLMNGDVGLTLPLLETRKGTAELLLRVAFQLPDGRIKWV
LPSRLDGVETVYAMTVHKSQGSEFKHTLLVLPDAPHPLLTRELIYTAVTRARDRFTLLEFGKSAVLDSAVKKRTWRASGL
AERLS
>Mature_645_residues
MQADLFSALTWEDALILLRDNNLLRDLDVAIARFLKQQCPQASYEVLLLAAFTSNQQASGHLCLDLKNRALATQLWGTNP
PPELVALLPGEPNNWLHELQQSTLVSQNGSTPLVLDGSRLYLRRNWAREVAVADAIEQKLATANPLPEAPLREALAKLFP
GSNNHTDWQQVACALASRSGISIITGGPGTGKTTTVVRLLGLLQSLAMADNQRLRIRLAAPTGKAAARLTESIGEQVGKL
HVDATVRDAIPTEVTTLHRLLGTRPDSRHFRHHGDNPLHADLVVVDEASMIDMDMMACLLEALSPHTRLILLGDKDQLAS
VEAGAVMGDLCRHAHEGRYKQRTIEFVNNTCGADISDYQETDQNPGNALAQQTAMLRTNWRSKDSPGIGELARAVNEENL
PQVRESFQRYPDSLYRQHLSSDSQQLETLLLNGSNGHTGLRALFSAVATPPAQRHDFDDWAAGLLKQLTHQQLLSGLRSG
PFGVEQLNQRITHHLQQQDLAPEREWYPGRPVMMTRNDYQLGLMNGDVGLTLPLLETRKGTAELLLRVAFQLPDGRIKWV
LPSRLDGVETVYAMTVHKSQGSEFKHTLLVLPDAPHPLLTRELIYTAVTRARDRFTLLEFGKSAVLDSAVKKRTWRASGL
AERLS

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=607, Percent_Identity=43.6573311367381, Blast_Score=391, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 71364; Mature: 71364

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQADLFSALTWEDALILLRDNNLLRDLDVAIARFLKQQCPQASYEVLLLAAFTSNQQASG
CCCHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCC
HLCLDLKNRALATQLWGTNPPPELVALLPGEPNNWLHELQQSTLVSQNGSTPLVLDGSRL
CEEEEECCCHHHHHHCCCCCCHHEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECCCEE
YLRRNWAREVAVADAIEQKLATANPLPEAPLREALAKLFPGSNNHTDWQQVACALASRSG
EEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
ISIITGGPGTGKTTTVVRLLGLLQSLAMADNQRLRIRLAAPTGKAAARLTESIGEQVGKL
CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCEE
HVDATVRDAIPTEVTTLHRLLGTRPDSRHFRHHGDNPLHADLVVVDEASMIDMDMMACLL
EECCHHHHCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
EALSPHTRLILLGDKDQLASVEAGAVMGDLCRHAHEGRYKQRTIEFVNNTCGADISDYQE
HHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHH
TDQNPGNALAQQTAMLRTNWRSKDSPGIGELARAVNEENLPQVRESFQRYPDSLYRQHLS
CCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHC
SDSQQLETLLLNGSNGHTGLRALFSAVATPPAQRHDFDDWAAGLLKQLTHQQLLSGLRSG
CCHHHHHHHEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PFGVEQLNQRITHHLQQQDLAPEREWYPGRPVMMTRNDYQLGLMNGDVGLTLPLLETRKG
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEEEECCCCEEEEHHHCCCC
TAELLLRVAFQLPDGRIKWVLPSRLDGVETVYAMTVHKSQGSEFKHTLLVLPDAPHPLLT
HHHHHHHHHHHCCCCCEEEECCCCCCCHHEEEEEEEECCCCCCCEEEEEEECCCCCHHHH
RELIYTAVTRARDRFTLLEFGKSAVLDSAVKKRTWRASGLAERLS
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQADLFSALTWEDALILLRDNNLLRDLDVAIARFLKQQCPQASYEVLLLAAFTSNQQASG
CCCHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCC
HLCLDLKNRALATQLWGTNPPPELVALLPGEPNNWLHELQQSTLVSQNGSTPLVLDGSRL
CEEEEECCCHHHHHHCCCCCCHHEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECCCEE
YLRRNWAREVAVADAIEQKLATANPLPEAPLREALAKLFPGSNNHTDWQQVACALASRSG
EEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
ISIITGGPGTGKTTTVVRLLGLLQSLAMADNQRLRIRLAAPTGKAAARLTESIGEQVGKL
CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCEE
HVDATVRDAIPTEVTTLHRLLGTRPDSRHFRHHGDNPLHADLVVVDEASMIDMDMMACLL
EECCHHHHCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
EALSPHTRLILLGDKDQLASVEAGAVMGDLCRHAHEGRYKQRTIEFVNNTCGADISDYQE
HHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHH
TDQNPGNALAQQTAMLRTNWRSKDSPGIGELARAVNEENLPQVRESFQRYPDSLYRQHLS
CCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHC
SDSQQLETLLLNGSNGHTGLRALFSAVATPPAQRHDFDDWAAGLLKQLTHQQLLSGLRSG
CCHHHHHHHEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PFGVEQLNQRITHHLQQQDLAPEREWYPGRPVMMTRNDYQLGLMNGDVGLTLPLLETRKG
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEEEECCCCEEEEHHHCCCC
TAELLLRVAFQLPDGRIKWVLPSRLDGVETVYAMTVHKSQGSEFKHTLLVLPDAPHPLLT
HHHHHHHHHHHCCCCCEEEECCCCCCCHHEEEEEEEECCCCCCCEEEEEEECCCCCHHHH
RELIYTAVTRARDRFTLLEFGKSAVLDSAVKKRTWRASGLAERLS
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]