Definition Alcanivorax borkumensis SK2 chromosome, complete genome.
Accession NC_008260
Length 3,120,143

Click here to switch to the map view.

The map label for this gene is 110834560

Identifier: 110834560

GI number: 110834560

Start: 1933514

End: 1933966

Strand: Direct

Name: 110834560

Synonym: ABO_1699

Alternate gene names: NA

Gene position: 1933514-1933966 (Clockwise)

Preceding gene: 110834559

Following gene: 110834561

Centisome position: 61.97

GC content: 54.75

Gene sequence:

>453_bases
GTGCGCACACGTCAGGAAAAAAATATCCGTCGTGCCAAAGCCCTGTCCTACTCTGGACTTATCCCCTTTTATGGCATGGC
TGGGCTATCTTGGTTTGCCCAAACCGGCAGCTGGGCACTGCATGCTCTGGCCACCTACTCCGCCATTGTACTGGCCTTTC
TCGGCGCCATTCATTGGGGCAGGGCGCTCGATAAAATGCCCTACAGCAACCAGTACCCAACACTACTATTTGGTCTGATA
CCGGCGTTATTGGCATGGCTTTCCCTGCTACTTCCGTTGGAACTATCGCTGCCCATGCTCGCCGCCGGGCTTATGTTCGT
GTGGGGCACAGAACAGATGGTATTCAATGACACACTCCCCACTTGGTATCGACACCTAAGGCATCAACTCACCGCCGCCG
CCGTTATCGCCGTCCTGATCGGTTGGGCTGCCACTATGTTCTGGATGCTATAA

Upstream 100 bases:

>100_bases
GCCACCTGAAAGCCCAACCCTGGGTTGGCTACCCCTCCTTGCCTTAACCTTCACTCTGCATCATCGATAATAGAAAAAAA
CATCCGTTGGAATCGACACT

Downstream 100 bases:

>100_bases
AGGGCGCATTGCTTCTAACCGCCAATTTTCGGCTTTTTACAAAACAACAGATGCTGATAGGGGGCCAGCCATGGCCGGCT
CTGTCCGCCCCCGCTACACT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MRTRQEKNIRRAKALSYSGLIPFYGMAGLSWFAQTGSWALHALATYSAIVLAFLGAIHWGRALDKMPYSNQYPTLLFGLI
PALLAWLSLLLPLELSLPMLAAGLMFVWGTEQMVFNDTLPTWYRHLRHQLTAAAVIAVLIGWAATMFWML

Sequences:

>Translated_150_residues
MRTRQEKNIRRAKALSYSGLIPFYGMAGLSWFAQTGSWALHALATYSAIVLAFLGAIHWGRALDKMPYSNQYPTLLFGLI
PALLAWLSLLLPLELSLPMLAAGLMFVWGTEQMVFNDTLPTWYRHLRHQLTAAAVIAVLIGWAATMFWML
>Mature_150_residues
MRTRQEKNIRRAKALSYSGLIPFYGMAGLSWFAQTGSWALHALATYSAIVLAFLGAIHWGRALDKMPYSNQYPTLLFGLI
PALLAWLSLLLPLELSLPMLAAGLMFVWGTEQMVFNDTLPTWYRHLRHQLTAAAVIAVLIGWAATMFWML

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16886; Mature: 16886

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTRQEKNIRRAKALSYSGLIPFYGMAGLSWFAQTGSWALHALATYSAIVLAFLGAIHWG
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
RALDKMPYSNQYPTLLFGLIPALLAWLSLLLPLELSLPMLAAGLMFVWGTEQMVFNDTLP
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCCCCH
TWYRHLRHQLTAAAVIAVLIGWAATMFWML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRTRQEKNIRRAKALSYSGLIPFYGMAGLSWFAQTGSWALHALATYSAIVLAFLGAIHWG
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
RALDKMPYSNQYPTLLFGLIPALLAWLSLLLPLELSLPMLAAGLMFVWGTEQMVFNDTLP
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCCCCH
TWYRHLRHQLTAAAVIAVLIGWAATMFWML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA