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The map label for this gene is ycfJ [H]

Identifier: 110834476

GI number: 110834476

Start: 1848895

End: 1849425

Strand: Direct

Name: ycfJ [H]

Synonym: ABO_1615

Alternate gene names: 110834476

Gene position: 1848895-1849425 (Clockwise)

Preceding gene: 110834475

Following gene: 110834478

Centisome position: 59.26

GC content: 53.86

Gene sequence:

>531_bases
ATGAAAAGCGCAGCAATTGCCACCTTAAGTATTGTGGGTGCCGTGGCCATCGCGGGTGTGGGCTATGGGGCTTATCAGGC
CGTTACCCCACAAAAATCAGGCTATGCCAAAGTGCTCAATGTAGAACCCATTGTGAAAAGCTGGCAAGAACCCCGTGAGG
TTTGCCAGCAAGTGAGTGTAGAGCGCAAAAAACCGGTCAAAGACCAACACCGGGTCACCGGTAGTGTGGTTGGTGCCGTT
ATCGGCGGCGTTGTGGGCCACCAGTTTGGCGGCGGCAGCGGTAAAGATGCCGCCACCGCAGGTGGTGCCATTGCCGGCGG
TGTGGCTGGCAACCAGATCCAAAAAGGAATGCAGGAAAAAAACACTTACACTGCAACAGAGCAGCGTTGCAATACGGTAA
TGGAAAACAAAAGCCGGACCGAAGGCTATGACGTGACCTATACCTTCAATGACAACGAACAGACCATTCGCATGGACAAG
AAACCCGGCGAACGGCTCCGCATTGAAGATGGCGACGTGGTCACGCAATAA

Upstream 100 bases:

>100_bases
GCACAATTCACATTCTTTTGCACTTGTTGTGAGCCACACAGCGAACATTTTCACTGCTACTGAATCATAATGAACACAAC
TAACAAATAAGGAGTCAGCC

Downstream 100 bases:

>100_bases
CGCCAACTACGCAAAAAGAAGCCCGCATTAGCGGGCTTCTTTTTTTGGGCTTTCTGCACATAGCAGTGCGCTGTCTGCAG
GCCATCATCCCGACAACATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MKSAAIATLSIVGAVAIAGVGYGAYQAVTPQKSGYAKVLNVEPIVKSWQEPREVCQQVSVERKKPVKDQHRVTGSVVGAV
IGGVVGHQFGGGSGKDAATAGGAIAGGVAGNQIQKGMQEKNTYTATEQRCNTVMENKSRTEGYDVTYTFNDNEQTIRMDK
KPGERLRIEDGDVVTQ

Sequences:

>Translated_176_residues
MKSAAIATLSIVGAVAIAGVGYGAYQAVTPQKSGYAKVLNVEPIVKSWQEPREVCQQVSVERKKPVKDQHRVTGSVVGAV
IGGVVGHQFGGGSGKDAATAGGAIAGGVAGNQIQKGMQEKNTYTATEQRCNTVMENKSRTEGYDVTYTFNDNEQTIRMDK
KPGERLRIEDGDVVTQ
>Mature_176_residues
MKSAAIATLSIVGAVAIAGVGYGAYQAVTPQKSGYAKVLNVEPIVKSWQEPREVCQQVSVERKKPVKDQHRVTGSVVGAV
IGGVVGHQFGGGSGKDAATAGGAIAGGVAGNQIQKGMQEKNTYTATEQRCNTVMENKSRTEGYDVTYTFNDNEQTIRMDK
KPGERLRIEDGDVVTQ

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To Rickettsia 17 kDa surface antigen [H]

Homologues:

Organism=Escherichia coli, GI1787353, Length=135, Percent_Identity=51.8518518518518, Blast_Score=155, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 18645; Mature: 18645

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSAAIATLSIVGAVAIAGVGYGAYQAVTPQKSGYAKVLNVEPIVKSWQEPREVCQQVSV
CCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH
ERKKPVKDQHRVTGSVVGAVIGGVVGHQFGGGSGKDAATAGGAIAGGVAGNQIQKGMQEK
HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHC
NTYTATEQRCNTVMENKSRTEGYDVTYTFNDNEQTIRMDKKPGERLRIEDGDVVTQ
CCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCCC
>Mature Secondary Structure
MKSAAIATLSIVGAVAIAGVGYGAYQAVTPQKSGYAKVLNVEPIVKSWQEPREVCQQVSV
CCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH
ERKKPVKDQHRVTGSVVGAVIGGVVGHQFGGGSGKDAATAGGAIAGGVAGNQIQKGMQEK
HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHC
NTYTATEQRCNTVMENKSRTEGYDVTYTFNDNEQTIRMDKKPGERLRIEDGDVVTQ
CCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]