| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is gspL
Identifier: 110834180
GI number: 110834180
Start: 1495360
End: 1496499
Strand: Direct
Name: gspL
Synonym: ABO_1319
Alternate gene names: NA
Gene position: 1495360-1496499 (Clockwise)
Preceding gene: 110834179
Following gene: 110834181
Centisome position: 47.93
GC content: 54.3
Gene sequence:
>1140_bases GTGGCAGAGGCTCCACTGATTTATTTAAGCGGTGCAGGGGGAACGGAACTGGATCTTGAACATCCGGTGCTGTTGCAGCG AAACCCTGCGGAACACGTCCAGGTCATGAGCCTGCGCGAAGCGCTGGAACAGTCTGCCGGCCAGACCCTCCATGTCATTG TCAGCGTAGCATTTGCCCGGCTAACCCATGTTAGCCTGAGCCGAAAACAGGCACGTCATATGCAGCGCATTCTTCCGTAT TTGCTGGAAGAACAGATGCTGGACAACCCTGAATCACTGTGGTTTGTTTCCCGCAAAGGCAGCGGTGATGACTATGAAGT GACCGCCATTGCTCGACAATTTATCGAGCAACTCAAACGGTGGGCCGCAGAACAAGACGTACTGATCACCTCCCTGCAGG TGGACGCTGAGCGGTTGCAGGGTCAAGCACCTCTGATTGCTGAGTTGGACGAAAATCAGACGCTATTAATGGCAGACCGA GATCGTTGCCTAGTGGTTGATGCTCAGCAGCGTGATGGTGTGCAGGCCCTGTTTGGCGACAGCCTCAATGAGCCTATGGT GTTATCCGGCCCAACGGCGTTTGTTGACGCCTTGCGTAACGGTTCAGGGCAGGAATTACTCACAGGCCCCTATGCCCCAA AACAAAAGAAAGGCAGTAATACAACGTTTGCTCCTTGGAAGCCACTTGGCATTCTTGCTGCATCCGTATTTGTACTGGCT CTGGTGGCCATCTGGGTGCAACAGTGGCGTTATAATCAGGCGGCCGAAGCGACTTTCGCCGATGCCCAGACGCTATTCGA GAACCTGTTCCCCGGTGATAAGGCCTCTGCGGCCCTGAGTCGCCAGTTTGAGGGCCGGCTTGCTCGCCTTGGTGGCGGTA GCAAGTCGGGGCAGGCTGATTTCTTCCCACTTCTGAGACCAGTGGCGCAAGTGTTGAAAGAGATAAACGTTGACCCCAAG CGGCTGCAATACGATCAACGTGAAAATACGCTGCTATTGGATGTTGGCGCTAAGGATTATGCCCAACTGGAACAACTTCA GAATGCGCTCAAAAAACAGGGAGCACGCGCCTCAATAGCAAATTATCGCAATAGTGCTCAGGGCGTGAGCGCGCGAATCA AGGTGGAGCAGCCGGGATGA
Upstream 100 bases:
>100_bases AACGGAGCAGGCTGTTAGAAAGTGCATTAAGCGTCGGCCATGCCAGACGGACACATGCAAAGATAATAACGCGGATATAA CGACCAAAGGACACAACAGC
Downstream 100 bases:
>100_bases GCAGTGCAGCAGAACTGAAGAAACTGGCGGCTCAACGTCGAGAACAGGCAGTACAGTGGTACGAAAGTAGAGAACCCCGA GAACAACACATCCTGAAAAT
Product: general secretion pathway protein L
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 379; Mature: 378
Protein sequence:
>379_residues MAEAPLIYLSGAGGTELDLEHPVLLQRNPAEHVQVMSLREALEQSAGQTLHVIVSVAFARLTHVSLSRKQARHMQRILPY LLEEQMLDNPESLWFVSRKGSGDDYEVTAIARQFIEQLKRWAAEQDVLITSLQVDAERLQGQAPLIAELDENQTLLMADR DRCLVVDAQQRDGVQALFGDSLNEPMVLSGPTAFVDALRNGSGQELLTGPYAPKQKKGSNTTFAPWKPLGILAASVFVLA LVAIWVQQWRYNQAAEATFADAQTLFENLFPGDKASAALSRQFEGRLARLGGGSKSGQADFFPLLRPVAQVLKEINVDPK RLQYDQRENTLLLDVGAKDYAQLEQLQNALKKQGARASIANYRNSAQGVSARIKVEQPG
Sequences:
>Translated_379_residues MAEAPLIYLSGAGGTELDLEHPVLLQRNPAEHVQVMSLREALEQSAGQTLHVIVSVAFARLTHVSLSRKQARHMQRILPY LLEEQMLDNPESLWFVSRKGSGDDYEVTAIARQFIEQLKRWAAEQDVLITSLQVDAERLQGQAPLIAELDENQTLLMADR DRCLVVDAQQRDGVQALFGDSLNEPMVLSGPTAFVDALRNGSGQELLTGPYAPKQKKGSNTTFAPWKPLGILAASVFVLA LVAIWVQQWRYNQAAEATFADAQTLFENLFPGDKASAALSRQFEGRLARLGGGSKSGQADFFPLLRPVAQVLKEINVDPK RLQYDQRENTLLLDVGAKDYAQLEQLQNALKKQGARASIANYRNSAQGVSARIKVEQPG >Mature_378_residues AEAPLIYLSGAGGTELDLEHPVLLQRNPAEHVQVMSLREALEQSAGQTLHVIVSVAFARLTHVSLSRKQARHMQRILPYL LEEQMLDNPESLWFVSRKGSGDDYEVTAIARQFIEQLKRWAAEQDVLITSLQVDAERLQGQAPLIAELDENQTLLMADRD RCLVVDAQQRDGVQALFGDSLNEPMVLSGPTAFVDALRNGSGQELLTGPYAPKQKKGSNTTFAPWKPLGILAASVFVLAL VAIWVQQWRYNQAAEATFADAQTLFENLFPGDKASAALSRQFEGRLARLGGGSKSGQADFFPLLRPVAQVLKEINVDPKR LQYDQRENTLLLDVGAKDYAQLEQLQNALKKQGARASIANYRNSAQGVSARIKVEQPG
Specific function: Unknown
COG id: COG3297
COG function: function code U; Type II secretory pathway, component PulL
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41826; Mature: 41695
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEAPLIYLSGAGGTELDLEHPVLLQRNPAEHVQVMSLREALEQSAGQTLHVIVSVAFAR CCCCCEEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH LTHVSLSRKQARHMQRILPYLLEEQMLDNPESLWFVSRKGSGDDYEVTAIARQFIEQLKR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH WAAEQDVLITSLQVDAERLQGQAPLIAELDENQTLLMADRDRCLVVDAQQRDGVQALFGD HCCCCCEEEEEHHHHHHHHCCCCCEEEECCCCCEEEEECCCCEEEEECCCCCCHHHHHCC SLNEPMVLSGPTAFVDALRNGSGQELLTGPYAPKQKKGSNTTFAPWKPLGILAASVFVLA CCCCCEEEECCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH LVAIWVQQWRYNQAAEATFADAQTLFENLFPGDKASAALSRQFEGRLARLGGGSKSGQAD HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCH FFPLLRPVAQVLKEINVDPKRLQYDQRENTLLLDVGAKDYAQLEQLQNALKKQGARASIA HHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHH NYRNSAQGVSARIKVEQPG HHCCCCCCCEEEEEECCCC >Mature Secondary Structure AEAPLIYLSGAGGTELDLEHPVLLQRNPAEHVQVMSLREALEQSAGQTLHVIVSVAFAR CCCCEEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH LTHVSLSRKQARHMQRILPYLLEEQMLDNPESLWFVSRKGSGDDYEVTAIARQFIEQLKR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH WAAEQDVLITSLQVDAERLQGQAPLIAELDENQTLLMADRDRCLVVDAQQRDGVQALFGD HCCCCCEEEEEHHHHHHHHCCCCCEEEECCCCCEEEEECCCCEEEEECCCCCCHHHHHCC SLNEPMVLSGPTAFVDALRNGSGQELLTGPYAPKQKKGSNTTFAPWKPLGILAASVFVLA CCCCCEEEECCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH LVAIWVQQWRYNQAAEATFADAQTLFENLFPGDKASAALSRQFEGRLARLGGGSKSGQAD HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCH FFPLLRPVAQVLKEINVDPKRLQYDQRENTLLLDVGAKDYAQLEQLQNALKKQGARASIA HHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHH NYRNSAQGVSARIKVEQPG HHCCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA