Definition Alcanivorax borkumensis SK2 chromosome, complete genome.
Accession NC_008260
Length 3,120,143

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The map label for this gene is gspK [H]

Identifier: 110834179

GI number: 110834179

Start: 1494235

End: 1495248

Strand: Direct

Name: gspK [H]

Synonym: ABO_1318

Alternate gene names: 110834179

Gene position: 1494235-1495248 (Clockwise)

Preceding gene: 110834178

Following gene: 110834180

Centisome position: 47.89

GC content: 54.14

Gene sequence:

>1014_bases
GTGATCGTGCTGCTACTGCTAGCCTTACTGACGACCATTACCGTTGAAGTGCTTTTCCGGCAAGATCGTTTCCTTACCCG
CGCCGATAATCTATTGCAATGGGACAAGCGCTACCAGTACGCCATGGCAGCTGAGGTGGTTGCCCAGCAGGGTCTAATTG
ATGACTTGCAGGATGACCAAAAGAATAACGCCCTAGTGGATGATTGCGTTGACGAGCAGTGGGCCGTGCAATTGCCGCCA
ACGCCCTATGAAGATGCCATACTCAGCGCCAGCGTGCAGGACCTGCAAGGCCGTTTCAATTTGAACTGGCTCATTACCGC
AGAAGGTGACAATTTTGTTCGAGACCAGGATGGTATCGACAGGCTCACCCGCCTGATCGAGCTCACCTTTCCCCAAGAAA
CAGACGCATCGCGGCTCGCCAACGAAATGGCCGACTGGCTAGATTCCAACAATATAGTGGACGGAGTTGAAGGGGCGGAA
GATGCGGATTACCGCACCCGGCGGACTCCAAATATGCCCGCCGCGCATGAATCTGAACTGCGTGCCTTGCTCAGCTTCCA
GGTAGCTAACCAGCCCCAGGACGGCATGATTTGGGGCTTGTTTACAGCTTTGCCATTGGGCACAACATTGAACGTTAATA
CTGCACCGCTTCAGGTACTGGATGCGGTGTTAGGTGCCACGGCGGGTGATACCGCGGCACAAGCTATTGTTAAAGAGCGG
GAGCAGGAGCCGATTGACGCCATTAGCGACCTGATGCAGGTTGCTCCTTTTAGTGAAATGGATCCCGACATCAAGCAGCA
GATAAGCAGCTTGCTCGGTGTCAGCAGTGAGTATTTTCAGGTTATGGTGGATGTAGAGGTCGACGGACAACTAAGTCGCC
TAGTAAGCCGGCTGCGCCGCCGCAATGGTGACGGGCAGAGCACTGAAGTATTTAGTCGGCAGGTCAGCCCATTGCTAACC
CCACTCGAACCGGCATGCAATCCCTTCTACAATGTGACCCAAGGCTCGTCTTGA

Upstream 100 bases:

>100_bases
GCAACATTGTGCACAGGTATTACCGAACAGTGGTGAATCCATGGGGATGACGGTAAACCTGTCAGGTCGAATGACTCGAA
GGCAAGGGGGCATGGCGTTG

Downstream 100 bases:

>100_bases
TACACTGGACTAACGGAGCAGGCTGTTAGAAAGTGCATTAAGCGTCGGCCATGCCAGACGGACACATGCAAAGATAATAA
CGCGGATATAACGACCAAAG

Product: general secretion pathway protein GspK

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MIVLLLLALLTTITVEVLFRQDRFLTRADNLLQWDKRYQYAMAAEVVAQQGLIDDLQDDQKNNALVDDCVDEQWAVQLPP
TPYEDAILSASVQDLQGRFNLNWLITAEGDNFVRDQDGIDRLTRLIELTFPQETDASRLANEMADWLDSNNIVDGVEGAE
DADYRTRRTPNMPAAHESELRALLSFQVANQPQDGMIWGLFTALPLGTTLNVNTAPLQVLDAVLGATAGDTAAQAIVKER
EQEPIDAISDLMQVAPFSEMDPDIKQQISSLLGVSSEYFQVMVDVEVDGQLSRLVSRLRRRNGDGQSTEVFSRQVSPLLT
PLEPACNPFYNVTQGSS

Sequences:

>Translated_337_residues
MIVLLLLALLTTITVEVLFRQDRFLTRADNLLQWDKRYQYAMAAEVVAQQGLIDDLQDDQKNNALVDDCVDEQWAVQLPP
TPYEDAILSASVQDLQGRFNLNWLITAEGDNFVRDQDGIDRLTRLIELTFPQETDASRLANEMADWLDSNNIVDGVEGAE
DADYRTRRTPNMPAAHESELRALLSFQVANQPQDGMIWGLFTALPLGTTLNVNTAPLQVLDAVLGATAGDTAAQAIVKER
EQEPIDAISDLMQVAPFSEMDPDIKQQISSLLGVSSEYFQVMVDVEVDGQLSRLVSRLRRRNGDGQSTEVFSRQVSPLLT
PLEPACNPFYNVTQGSS
>Mature_337_residues
MIVLLLLALLTTITVEVLFRQDRFLTRADNLLQWDKRYQYAMAAEVVAQQGLIDDLQDDQKNNALVDDCVDEQWAVQLPP
TPYEDAILSASVQDLQGRFNLNWLITAEGDNFVRDQDGIDRLTRLIELTFPQETDASRLANEMADWLDSNNIVDGVEGAE
DADYRTRRTPNMPAAHESELRALLSFQVANQPQDGMIWGLFTALPLGTTLNVNTAPLQVLDAVLGATAGDTAAQAIVKER
EQEPIDAISDLMQVAPFSEMDPDIKQQISSLLGVSSEYFQVMVDVEVDGQLSRLVSRLRRRNGDGQSTEVFSRQVSPLLT
PLEPACNPFYNVTQGSS

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG3156

COG function: function code U; Type II secretory pathway, component PulK

Gene ontology:

Cell location: Cell inner membrane (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP K family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005628 [H]

Pfam domain/function: PF03934 GspK [H]

EC number: NA

Molecular weight: Translated: 37487; Mature: 37487

Theoretical pI: Translated: 3.95; Mature: 3.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVLLLLALLTTITVEVLFRQDRFLTRADNLLQWDKRYQYAMAAEVVAQQGLIDDLQDDQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC
KNNALVDDCVDEQWAVQLPPTPYEDAILSASVQDLQGRFNLNWLITAEGDNFVRDQDGID
CCCCHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHH
RLTRLIELTFPQETDASRLANEMADWLDSNNIVDGVEGAEDADYRTRRTPNMPAAHESEL
HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHH
RALLSFQVANQPQDGMIWGLFTALPLGTTLNVNTAPLQVLDAVLGATAGDTAAQAIVKER
HHHHHHHHCCCCCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
EQEPIDAISDLMQVAPFSEMDPDIKQQISSLLGVSSEYFQVMVDVEVDGQLSRLVSRLRR
CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHH
RNGDGQSTEVFSRQVSPLLTPLEPACNPFYNVTQGSS
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIVLLLLALLTTITVEVLFRQDRFLTRADNLLQWDKRYQYAMAAEVVAQQGLIDDLQDDQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC
KNNALVDDCVDEQWAVQLPPTPYEDAILSASVQDLQGRFNLNWLITAEGDNFVRDQDGID
CCCCHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHH
RLTRLIELTFPQETDASRLANEMADWLDSNNIVDGVEGAEDADYRTRRTPNMPAAHESEL
HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHH
RALLSFQVANQPQDGMIWGLFTALPLGTTLNVNTAPLQVLDAVLGATAGDTAAQAIVKER
HHHHHHHHCCCCCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
EQEPIDAISDLMQVAPFSEMDPDIKQQISSLLGVSSEYFQVMVDVEVDGQLSRLVSRLRR
CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHH
RNGDGQSTEVFSRQVSPLLTPLEPACNPFYNVTQGSS
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1588814; 10984043 [H]