| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is gspM
Identifier: 110834181
GI number: 110834181
Start: 1496496
End: 1497014
Strand: Direct
Name: gspM
Synonym: ABO_1320
Alternate gene names: NA
Gene position: 1496496-1497014 (Clockwise)
Preceding gene: 110834180
Following gene: 110834182
Centisome position: 47.96
GC content: 52.99
Gene sequence:
>519_bases ATGAGCAGTGCAGCAGAACTGAAGAAACTGGCGGCTCAACGTCGAGAACAGGCAGTACAGTGGTACGAAAGTAGAGAACC CCGAGAACAACACATCCTGAAAATATTGGCCGTGGTAGCGTTTGTGGTGCTGCTGTATTGGTTGCTCTGGGCTCCGTCGG TCGCGGCCAGGGATCAGGCAAAGAAGCAATTTATGGTCAATCAGCAGACGTTACAGTGGATCCAGGACAATCGCGAAGCG GTAATCGCGGCTCGGCGGAGCGATGTATCGTCAGCACAACCCAACGGCAATTGGACCGGTAACGTGAGCCGTAGTGCTGA TCAGTTTGGCCTTACTTTGAAAGGCTTTTCACCGGATGGTAATCGCGCCGTGCGTATCCAGATGGAAAATCAGGCAACCT CTCAAACGGTACTTTGGCTGCAATCGCTTCAGCAGAGCGGCATACAGATAAGCAACCTTGAAATGACGCCTGGTGAGAAA TCGGGTACCGCTACGGTGCGTGCGACCCTGCAGAAGTAA
Upstream 100 bases:
>100_bases TTCAGAATGCGCTCAAAAAACAGGGAGCACGCGCCTCAATAGCAAATTATCGCAATAGTGCTCAGGGCGTGAGCGCGCGA ATCAAGGTGGAGCAGCCGGG
Downstream 100 bases:
>100_bases GCGGTAAGGCGCCACAAAAAAATGAGTTGATGGCCGTAATCGCTATACGGCCCTACGCCTATCTCTGTCGTTTAGCTGTA CTAAGCAGCCGGCCTGCTCA
Product: general secretion pathway protein M
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 172; Mature: 171
Protein sequence:
>172_residues MSSAAELKKLAAQRREQAVQWYESREPREQHILKILAVVAFVVLLYWLLWAPSVAARDQAKKQFMVNQQTLQWIQDNREA VIAARRSDVSSAQPNGNWTGNVSRSADQFGLTLKGFSPDGNRAVRIQMENQATSQTVLWLQSLQQSGIQISNLEMTPGEK SGTATVRATLQK
Sequences:
>Translated_172_residues MSSAAELKKLAAQRREQAVQWYESREPREQHILKILAVVAFVVLLYWLLWAPSVAARDQAKKQFMVNQQTLQWIQDNREA VIAARRSDVSSAQPNGNWTGNVSRSADQFGLTLKGFSPDGNRAVRIQMENQATSQTVLWLQSLQQSGIQISNLEMTPGEK SGTATVRATLQK >Mature_171_residues SSAAELKKLAAQRREQAVQWYESREPREQHILKILAVVAFVVLLYWLLWAPSVAARDQAKKQFMVNQQTLQWIQDNREAV IAARRSDVSSAQPNGNWTGNVSRSADQFGLTLKGFSPDGNRAVRIQMENQATSQTVLWLQSLQQSGIQISNLEMTPGEKS GTATVRATLQK
Specific function: Unknown
COG id: COG3149
COG function: function code U; Type II secretory pathway, component PulM
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19296; Mature: 19165
Theoretical pI: Translated: 10.64; Mature: 10.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSAAELKKLAAQRREQAVQWYESREPREQHILKILAVVAFVVLLYWLLWAPSVAARDQA CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH KKQFMVNQQTLQWIQDNREAVIAARRSDVSSAQPNGNWTGNVSRSADQFGLTLKGFSPDG HHHHHHHHHHHHHHHCCCHHEEHHHHCCCCCCCCCCCCCCCCCCCHHHHCCEEECCCCCC NRAVRIQMENQATSQTVLWLQSLQQSGIQISNLEMTPGEKSGTATVRATLQK CCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEEEECC >Mature Secondary Structure SSAAELKKLAAQRREQAVQWYESREPREQHILKILAVVAFVVLLYWLLWAPSVAARDQA CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH KKQFMVNQQTLQWIQDNREAVIAARRSDVSSAQPNGNWTGNVSRSADQFGLTLKGFSPDG HHHHHHHHHHHHHHHCCCHHEEHHHHCCCCCCCCCCCCCCCCCCCHHHHCCEEECCCCCC NRAVRIQMENQATSQTVLWLQSLQQSGIQISNLEMTPGEKSGTATVRATLQK CCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA