| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is pilZ
Identifier: 110833937
GI number: 110833937
Start: 1217792
End: 1218139
Strand: Direct
Name: pilZ
Synonym: ABO_1076
Alternate gene names: NA
Gene position: 1217792-1218139 (Clockwise)
Preceding gene: 110833936
Following gene: 110833938
Centisome position: 39.03
GC content: 50.86
Gene sequence:
>348_bases ATGAAGATGCCGGTAGGTCGCAATGGCATTCTGTCGCTTTCCATCAAAGATAAAGCGGTGCTGTATTCGGCTTACATGCC GTTCATTACCAACGGCGGTTTGTTTATTCCCACTGAAAAGCAATACACGTTAGGGGAAGAGATCTTCCTGCTACTGAACA TTATGGATGAAGCCGATAAGATTCCAGTGGCTGGCAAGGTCGTGTGGATCACCCCCAAAGGGGCTCAAGGGAACCGTAGT GCGGGGATCGGTGTGCAATTCTCCGATCAGGACGATACCGCCCGCGTTACCATCGAGAATCATCTGGCCGGTTCACTGGA ATCGGATCGTCCTACGTATACCATGTGA
Upstream 100 bases:
>100_bases CTACGAGCAGTGGTTGTTGGTGTTGGTGGGCGTTGACGCTGCGGCGGCGGCGCACTAACCTTGATTATAGATTAATAATA ATTTCGTAAGGGGTTGGTTC
Downstream 100 bases:
>100_bases GAGGCTGACTCGTATTGCGCTGCGTGCAACAACGCAAGCGTGTTGGGTTCTGGCTGTCAAATAAGAAGGCCGCCTCTTTT TTAGGACGCGGCCTTCTGTA
Product: type IV fimbriae assembly protein
Products: NA
Alternate protein names: Type IV Pilus Biogenesis Protein PilZ; Type 4 Fimbrial Biogenesis Protein PilZ; Type 4 Fimbrial Biogenesis Protein; Type IV Fimbriae Assembly Protein; Type IV Pilus Assembly Protein PilZ; Type IV Pilus Assembly Protein; Type IV Fimbrial Biogenesis Protein PilZ; Tfp Pilus Assembly Protein PilZ; Type 4 Fimbrial Biogenesis Protein PILZ; Pilus Biogenesis Protein PilZ; Type Iv Pilus Assembly Pilz; DNA Polymerase-Related Protein; Tfp Pilus Assembly Protein; TYPE 4 Pilus Assembly Protein
Number of amino acids: Translated: 115; Mature: 115
Protein sequence:
>115_residues MKMPVGRNGILSLSIKDKAVLYSAYMPFITNGGLFIPTEKQYTLGEEIFLLLNIMDEADKIPVAGKVVWITPKGAQGNRS AGIGVQFSDQDDTARVTIENHLAGSLESDRPTYTM
Sequences:
>Translated_115_residues MKMPVGRNGILSLSIKDKAVLYSAYMPFITNGGLFIPTEKQYTLGEEIFLLLNIMDEADKIPVAGKVVWITPKGAQGNRS AGIGVQFSDQDDTARVTIENHLAGSLESDRPTYTM >Mature_115_residues MKMPVGRNGILSLSIKDKAVLYSAYMPFITNGGLFIPTEKQYTLGEEIFLLLNIMDEADKIPVAGKVVWITPKGAQGNRS AGIGVQFSDQDDTARVTIENHLAGSLESDRPTYTM
Specific function: Unknown
COG id: COG3215
COG function: function code NU; Tfp pilus assembly protein PilZ
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12579; Mature: 12579
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMPVGRNGILSLSIKDKAVLYSAYMPFITNGGLFIPTEKQYTLGEEIFLLLNIMDEADK CCCCCCCCCEEEEEECCCEEEEEEECCEECCCCEEEECCCCCCCCCEEEEEEEECCCCCC IPVAGKVVWITPKGAQGNRSAGIGVQFSDQDDTARVTIENHLAGSLESDRPTYTM CCCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCC >Mature Secondary Structure MKMPVGRNGILSLSIKDKAVLYSAYMPFITNGGLFIPTEKQYTLGEEIFLLLNIMDEADK CCCCCCCCCEEEEEECCCEEEEEEECCEECCCCEEEECCCCCCCCCEEEEEEEECCCCCC IPVAGKVVWITPKGAQGNRSAGIGVQFSDQDDTARVTIENHLAGSLESDRPTYTM CCCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA