| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is pabC [H]
Identifier: 110833933
GI number: 110833933
Start: 1214247
End: 1215059
Strand: Direct
Name: pabC [H]
Synonym: ABO_1072
Alternate gene names: 110833933
Gene position: 1214247-1215059 (Clockwise)
Preceding gene: 110833932
Following gene: 110833934
Centisome position: 38.92
GC content: 60.27
Gene sequence:
>813_bases ATGCCACTAGACCCCCGTGATCGCGGCCTCGCTTACGGAGATGGTGTGTTTGAAACCGTGCGAGTGACCGCCTCCGGCAA GTCGCCATTGTGGGCTCGCCATCGCGCCCGCTTGTATGGTGGGCTACAAACGCTGGGCATCGCACAACCCTCCGAGTCTA CATTGCAGGCAGCACTGGATGCTGGCGTTGCGGCGCTAGGTGGCGAGCCGGGGGTAGTCAAACTCACGGTTACCCGTGGC GTGGGTGGCAGGGGCTATTTGCCACCGCAATCGGCGCAGCCTACGGTTCTGTGGCAGACGAGCACTTTGCCAGAGTGGTC TGAGCGACAACGCCGTGAAGGGTTAGCGCTGGGATTGTGCCAGACTCCTTTGTACCCTGATCCGTTGGCGGGCTACAAAC ACCTTAACCGCCTTGCACAGGTAATGGCCCGCCGTGAAGTGGCACAGCAAGGGTGGGACGAAGGATTGCTACTCAGCACC CGTCGTCAGCCCTTGGAGGCTACGTCCATGAATCTCTTTGCCCGCTTCGCCGATCACTGGTGGATGCCTGATTTGGCTGC AGCGGGTGCCGGTGTGGAGGGCGTTATGCAAGGCCACTTGCGTGATACGCTGCGCCATGGCGGTGAAAAAGTGGTCTGCG ATCTGCGGCCACTGTCACAGCTGCGTACTGCCGAAGGCCTGTTTTTGTGTAACAGTGTTGTCGGCGTGCTCGCGGTGCGT AAACTGGCGCAATGGCATTGGCCGGTGTTGGCATCGGTCCGGGAACTGCAACAGTCGACAGAAACCTTTTTGGCCGGCTC ACTGAAGGGCTAA
Upstream 100 bases:
>100_bases TCGTGGCAAATCAGGCTCAGGAACGCACCATCAACTACGCGCTGTCCAATTCCTTTGGTTTTGGTGGTACTAACGGCACC TTGCTGTTCAAGAAGGTGTA
Downstream 100 bases:
>100_bases TAACCCCACTATGCGTAAAAAAATCCGTATTTTTGGACTGTTGGTTGTCCTACTGATAGTCGCTGTTCCTGTGGCGGGGG CCTGGGTCAGTAGTTATCTA
Product: 4-amino-4-deoxychorismate lyase
Products: NA
Alternate protein names: 4-amino-4-deoxychorismate lyase; ADC lyase; ADCL [H]
Number of amino acids: Translated: 270; Mature: 269
Protein sequence:
>270_residues MPLDPRDRGLAYGDGVFETVRVTASGKSPLWARHRARLYGGLQTLGIAQPSESTLQAALDAGVAALGGEPGVVKLTVTRG VGGRGYLPPQSAQPTVLWQTSTLPEWSERQRREGLALGLCQTPLYPDPLAGYKHLNRLAQVMARREVAQQGWDEGLLLST RRQPLEATSMNLFARFADHWWMPDLAAAGAGVEGVMQGHLRDTLRHGGEKVVCDLRPLSQLRTAEGLFLCNSVVGVLAVR KLAQWHWPVLASVRELQQSTETFLAGSLKG
Sequences:
>Translated_270_residues MPLDPRDRGLAYGDGVFETVRVTASGKSPLWARHRARLYGGLQTLGIAQPSESTLQAALDAGVAALGGEPGVVKLTVTRG VGGRGYLPPQSAQPTVLWQTSTLPEWSERQRREGLALGLCQTPLYPDPLAGYKHLNRLAQVMARREVAQQGWDEGLLLST RRQPLEATSMNLFARFADHWWMPDLAAAGAGVEGVMQGHLRDTLRHGGEKVVCDLRPLSQLRTAEGLFLCNSVVGVLAVR KLAQWHWPVLASVRELQQSTETFLAGSLKG >Mature_269_residues PLDPRDRGLAYGDGVFETVRVTASGKSPLWARHRARLYGGLQTLGIAQPSESTLQAALDAGVAALGGEPGVVKLTVTRGV GGRGYLPPQSAQPTVLWQTSTLPEWSERQRREGLALGLCQTPLYPDPLAGYKHLNRLAQVMARREVAQQGWDEGLLLSTR RQPLEATSMNLFARFADHWWMPDLAAAGAGVEGVMQGHLRDTLRHGGEKVVCDLRPLSQLRTAEGLFLCNSVVGVLAVRK LAQWHWPVLASVRELQQSTETFLAGSLKG
Specific function: Converts 4-amino-4-deoxychorismate into 4-aminobenzoate (PABA) and pyruvate [H]
COG id: COG0115
COG function: function code EH; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Escherichia coli, GI1787338, Length=234, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017824 - InterPro: IPR001544 - InterPro: IPR018300 [H]
Pfam domain/function: PF01063 Aminotran_4 [H]
EC number: =4.1.3.38 [H]
Molecular weight: Translated: 29389; Mature: 29258
Theoretical pI: Translated: 9.52; Mature: 9.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLDPRDRGLAYGDGVFETVRVTASGKSPLWARHRARLYGGLQTLGIAQPSESTLQAALD CCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHH AGVAALGGEPGVVKLTVTRGVGGRGYLPPQSAQPTVLWQTSTLPEWSERQRREGLALGLC HHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCEEEEE QTPLYPDPLAGYKHLNRLAQVMARREVAQQGWDEGLLLSTRRQPLEATSMNLFARFADHW CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHC WMPDLAAAGAGVEGVMQGHLRDTLRHGGEKVVCDLRPLSQLRTAEGLFLCNSVVGVLAVR CCCHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH KLAQWHWPVLASVRELQQSTETFLAGSLKG HHHHHCCHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure PLDPRDRGLAYGDGVFETVRVTASGKSPLWARHRARLYGGLQTLGIAQPSESTLQAALD CCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHH AGVAALGGEPGVVKLTVTRGVGGRGYLPPQSAQPTVLWQTSTLPEWSERQRREGLALGLC HHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCEEEEE QTPLYPDPLAGYKHLNRLAQVMARREVAQQGWDEGLLLSTRRQPLEATSMNLFARFADHW CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHC WMPDLAAAGAGVEGVMQGHLRDTLRHGGEKVVCDLRPLSQLRTAEGLFLCNSVVGVLAVR CCCHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH KLAQWHWPVLASVRELQQSTETFLAGSLKG HHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]