| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is aceE [H]
Identifier: 110833483
GI number: 110833483
Start: 684709
End: 687381
Strand: Direct
Name: aceE [H]
Synonym: ABO_0622
Alternate gene names: 110833483
Gene position: 684709-687381 (Clockwise)
Preceding gene: 110833482
Following gene: 110833484
Centisome position: 21.94
GC content: 53.54
Gene sequence:
>2673_bases ATGCAAAAACGTAGTTTTTTTGATGACGTTGATCCGGCAGAAACCCGAGAGTGGCTCGAAGCCCTAGAATCGGTGGTCGA GCGCGAGGGCCCGGAGCGAGCAGCCTGGTTACTCGACGTCATTACCAACGAAGCCCAAGAGCAGGGCGTTTATCGTACCC ACCTCAATACGCCATACCTGAATACGATTGCCCCCAAAGACGAAGCCGCCATTCCCGGTGACATGTTCATGGAGCGCCGC ATTCGCTCTCTGATCCGTTGGAATGCCATGGCCACAGTCATGCGAGCGAACATCGATAACGATGATGAGCTGGGTGGGCA TATTGCTTCCTTTGCCTCCTCGGCCACGCTTTATGATGTGGGGTTTAACCATTTCTTCCGTGCCCCCAGTGAAGAAAACG AGGGCGACTTGGTGTTCTTTCAGGGACATTCGGCACCGGGCGTGTACGCGCGGGCCTACTTGGAAGGGCGTATCAGTGAA GAGCAGTTGGATAATTTCCGCCGAGAAGTGGATGGTAAAGGGCTTTCGTCTTACCCGCACCCTTGGCTGATGCCGGACTT TTGGCAATTCCCCACTGTATCCATGGGGCTGGGGCCGATTCAGGCCATTTATCAGGCCCATATCATGAAGTACCTGCAGA ATCGGGAATTAATCCAGCAGGATAACCGCAAAGTGTGGGCATTTCTTGGTGACGGAGAAATGGACGAGCCCGAGTCCCTC GGCGCTCTTGGCCTGGCAGGCCGAGAGAAGCTGGATAACCTGGTGTTTGTGGTGAATTGTAATCTGCAGCGACTGGATGG CCCGGTGCGCGGTAATGGCAAGATCATTCAGGAACTGGAAGGTGTGTTCCGTGGTGCGGGCTGGAATGTTATCAAGGTCG TGTGGGGGCGTTTGTGGGATCCGTTGTTGGAAAAAGACAGCGAGGGCCTGTTGCGCCGCCGCATGGAAGAATGTGTGGAC GGCGAGTATCAGGCGTATAAGAAAAATGGCGGGGCTTATACCCGCGAACACTTTTTCGGTGAGAATCCGGAGCTAAAGAA ACTGGTTGAGCACATGAGTGACGACGATGTGTATCGACTGAACCGGGGTGGCCACGACCCGTTCAAGGTGTATGCGGCCT ATCATGAAGCGGTGAACCATACGGGTCAGCCGACGGTGATTCTGGCCAAAACGGTTAAAGGCTACGCCACCGGTGCCGGT GAAGCGGTGAACAAGGCTCACCAAATGAAGAAACTGGACTTGGAGAGCCTGAAGGATTTCCGAGACCGTTTCGATATGCC GTTCACCGATGAACAGCTAGAAGATGTTCCCTATTATCGTCCAGCGGATGATTCCCCGGAGCTGCGTTACATGAAGGAGC AGCGCGACAAATTGGGTGGTTACATGCCTGTGCGTCGACGCAAAGCGAGTCAGCAGTTAACCATCCCTGGGCTGGATGTA TTTGCCAACTTTCTGGAAGGGAGTGGTGACCGTGAAATTTCCACTACCATGGCCTTTGTGCGCATGATGAGCACCCTGAT CAAGGATAAGCAGATTGGTGATCGGGTGGTGCCTATTGTGCCCGATGAAGCACGCACCTTTGGTATGGAGGGTCTGTTCC GCCAACTAGGTATTTATTCCTCTGGGGGGCAAAAATACGAACCCGAAGATGCCGGCCAGATTATGTATTACCGGGAAGAA AAGAAGGGCCGAATTCTTGAAGAAGGGATCAATGAGGCCGGCGCCATGTCCGGCTGGCTTGCTGCAGCTACCAGTTATAG CGTTCATAATTTTACCCTGATTCCGTTCTATATCTATTACTCCATGTTCGGCTTTCAGCGGGTGGGCGACCTGGCCTGGG CAGCAGGGGATTCACAGGCACGGGGTTTTCTATTGGGGGCCACAGCAGGGCGCACTACGCTTAACGGTGAAGGTCTGCAG CATCAGGATGGTCACAGTCATATTCTTTCCAGCACGGTACCCAACTGTGTCAGCTACGATCCCACCTACAGTTATGAGCT AGCGGTGATTCTTCAAGATGGCCTCAGACGCATGTATGAGGATAACGAACGGGTGTTTTATTACCTGACGTTGATGAATG AAAACTACATTCATGGGGCCATGCCCGAGGGGGCCGAAGAAGGTATCCGCAAGGGCATGTATCTGTTGCGCGAAGGTAAA GCGAAGACCAAGAAAAGCCCTAAAGTGCAGCTGCTGGGAAGCGGTACGATTTTACGTGAAGTGGAAGCGGCGGCAGAACT GCTACGGGAAGATTTTGACGTTGCGGCTGATGTGTGGAGTGTGACCAGCTTTAACGAACTGCGCCGTGAAGGCCTGAAAA TGGACCGCGATGAGATGCTCAACCCGGAAGAGGAGCGTCCGGCAAACTGGGTAGAAAAATGCCTGGATGGTCGTAGTGGT CCGGTGATTGCTTCAACGGATTACATGCGGGCCTATGCCGACCAGATTCGTCCCTGGGTGAACGCGCCCTACACGGTTCT AGGAACGGATGGATTCGGGCGCAGTGATTCGCGCCAGAAGTTGCGTCACTTCTTTGAAGTCGATCGTTACTTCGTGGTTC TGGCCGCTCTTAATGCCCTGCGCAAAGAGGGCAAAGTTGAGGTAGGGCTAGTAAAACAGGCCATCGAGAAATACGGCATT GACACGGATAAACCCTATCCGGTGATGCATTAA
Upstream 100 bases:
>100_bases CACCACAAGTCTCAGGCCCAGCCACCCTTTGGGCCTCTTTTTAGCGTCGTTGCAGTGATCCTGCGACGGCGCTTGGCAAC GCGAAAAAGGACGCACGCCC
Downstream 100 bases:
>100_bases TCGCCCCCGTCACTGATTACCGATCAGTGATCTCACCATAAGGAGTTAAGGTGTGAGTAAAACGCAAATATATGTTCCCG ATGTGGGCAGCAGTGATCCT
Product: pyruvate dehydrogenase subunit E1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 890; Mature: 890
Protein sequence:
>890_residues MQKRSFFDDVDPAETREWLEALESVVEREGPERAAWLLDVITNEAQEQGVYRTHLNTPYLNTIAPKDEAAIPGDMFMERR IRSLIRWNAMATVMRANIDNDDELGGHIASFASSATLYDVGFNHFFRAPSEENEGDLVFFQGHSAPGVYARAYLEGRISE EQLDNFRREVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIQAIYQAHIMKYLQNRELIQQDNRKVWAFLGDGEMDEPESL GALGLAGREKLDNLVFVVNCNLQRLDGPVRGNGKIIQELEGVFRGAGWNVIKVVWGRLWDPLLEKDSEGLLRRRMEECVD GEYQAYKKNGGAYTREHFFGENPELKKLVEHMSDDDVYRLNRGGHDPFKVYAAYHEAVNHTGQPTVILAKTVKGYATGAG EAVNKAHQMKKLDLESLKDFRDRFDMPFTDEQLEDVPYYRPADDSPELRYMKEQRDKLGGYMPVRRRKASQQLTIPGLDV FANFLEGSGDREISTTMAFVRMMSTLIKDKQIGDRVVPIVPDEARTFGMEGLFRQLGIYSSGGQKYEPEDAGQIMYYREE KKGRILEEGINEAGAMSGWLAAATSYSVHNFTLIPFYIYYSMFGFQRVGDLAWAAGDSQARGFLLGATAGRTTLNGEGLQ HQDGHSHILSSTVPNCVSYDPTYSYELAVILQDGLRRMYEDNERVFYYLTLMNENYIHGAMPEGAEEGIRKGMYLLREGK AKTKKSPKVQLLGSGTILREVEAAAELLREDFDVAADVWSVTSFNELRREGLKMDRDEMLNPEEERPANWVEKCLDGRSG PVIASTDYMRAYADQIRPWVNAPYTVLGTDGFGRSDSRQKLRHFFEVDRYFVVLAALNALRKEGKVEVGLVKQAIEKYGI DTDKPYPVMH
Sequences:
>Translated_890_residues MQKRSFFDDVDPAETREWLEALESVVEREGPERAAWLLDVITNEAQEQGVYRTHLNTPYLNTIAPKDEAAIPGDMFMERR IRSLIRWNAMATVMRANIDNDDELGGHIASFASSATLYDVGFNHFFRAPSEENEGDLVFFQGHSAPGVYARAYLEGRISE EQLDNFRREVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIQAIYQAHIMKYLQNRELIQQDNRKVWAFLGDGEMDEPESL GALGLAGREKLDNLVFVVNCNLQRLDGPVRGNGKIIQELEGVFRGAGWNVIKVVWGRLWDPLLEKDSEGLLRRRMEECVD GEYQAYKKNGGAYTREHFFGENPELKKLVEHMSDDDVYRLNRGGHDPFKVYAAYHEAVNHTGQPTVILAKTVKGYATGAG EAVNKAHQMKKLDLESLKDFRDRFDMPFTDEQLEDVPYYRPADDSPELRYMKEQRDKLGGYMPVRRRKASQQLTIPGLDV FANFLEGSGDREISTTMAFVRMMSTLIKDKQIGDRVVPIVPDEARTFGMEGLFRQLGIYSSGGQKYEPEDAGQIMYYREE KKGRILEEGINEAGAMSGWLAAATSYSVHNFTLIPFYIYYSMFGFQRVGDLAWAAGDSQARGFLLGATAGRTTLNGEGLQ HQDGHSHILSSTVPNCVSYDPTYSYELAVILQDGLRRMYEDNERVFYYLTLMNENYIHGAMPEGAEEGIRKGMYLLREGK AKTKKSPKVQLLGSGTILREVEAAAELLREDFDVAADVWSVTSFNELRREGLKMDRDEMLNPEEERPANWVEKCLDGRSG PVIASTDYMRAYADQIRPWVNAPYTVLGTDGFGRSDSRQKLRHFFEVDRYFVVLAALNALRKEGKVEVGLVKQAIEKYGI DTDKPYPVMH >Mature_890_residues MQKRSFFDDVDPAETREWLEALESVVEREGPERAAWLLDVITNEAQEQGVYRTHLNTPYLNTIAPKDEAAIPGDMFMERR IRSLIRWNAMATVMRANIDNDDELGGHIASFASSATLYDVGFNHFFRAPSEENEGDLVFFQGHSAPGVYARAYLEGRISE EQLDNFRREVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIQAIYQAHIMKYLQNRELIQQDNRKVWAFLGDGEMDEPESL GALGLAGREKLDNLVFVVNCNLQRLDGPVRGNGKIIQELEGVFRGAGWNVIKVVWGRLWDPLLEKDSEGLLRRRMEECVD GEYQAYKKNGGAYTREHFFGENPELKKLVEHMSDDDVYRLNRGGHDPFKVYAAYHEAVNHTGQPTVILAKTVKGYATGAG EAVNKAHQMKKLDLESLKDFRDRFDMPFTDEQLEDVPYYRPADDSPELRYMKEQRDKLGGYMPVRRRKASQQLTIPGLDV FANFLEGSGDREISTTMAFVRMMSTLIKDKQIGDRVVPIVPDEARTFGMEGLFRQLGIYSSGGQKYEPEDAGQIMYYREE KKGRILEEGINEAGAMSGWLAAATSYSVHNFTLIPFYIYYSMFGFQRVGDLAWAAGDSQARGFLLGATAGRTTLNGEGLQ HQDGHSHILSSTVPNCVSYDPTYSYELAVILQDGLRRMYEDNERVFYYLTLMNENYIHGAMPEGAEEGIRKGMYLLREGK AKTKKSPKVQLLGSGTILREVEAAAELLREDFDVAADVWSVTSFNELRREGLKMDRDEMLNPEEERPANWVEKCLDGRSG PVIASTDYMRAYADQIRPWVNAPYTVLGTDGFGRSDSRQKLRHFFEVDRYFVVLAALNALRKEGKVEVGLVKQAIEKYGI DTDKPYPVMH
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786304, Length=887, Percent_Identity=59.1882750845547, Blast_Score=1066, Evalue=0.0,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 101111; Mature: 101111
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKRSFFDDVDPAETREWLEALESVVEREGPERAAWLLDVITNEAQEQGVYRTHLNTPYL CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCC NTIAPKDEAAIPGDMFMERRIRSLIRWNAMATVMRANIDNDDELGGHIASFASSATLYDV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEC GFNHFFRAPSEENEGDLVFFQGHSAPGVYARAYLEGRISEEQLDNFRREVDGKGLSSYPH CHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC PWLMPDFWQFPTVSMGLGPIQAIYQAHIMKYLQNRELIQQDNRKVWAFLGDGEMDEPESL CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEECCCCCCCCHHC GALGLAGREKLDNLVFVVNCNLQRLDGPVRGNGKIIQELEGVFRGAGWNVIKVVWGRLWD CCCCCCCHHHHCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH PLLEKDSEGLLRRRMEECVDGEYQAYKKNGGAYTREHFFGENPELKKLVEHMSDDDVYRL HHHCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHCCCCCHHHHHHHHCCCCCEEEC NRGGHDPFKVYAAYHEAVNHTGQPTVILAKTVKGYATGAGEAVNKAHQMKKLDLESLKDF CCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHHH RDRFDMPFTDEQLEDVPYYRPADDSPELRYMKEQRDKLGGYMPVRRRKASQQLTIPGLDV HHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCHHH FANFLEGSGDREISTTMAFVRMMSTLIKDKQIGDRVVPIVPDEARTFGMEGLFRQLGIYS HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHCCCC SGGQKYEPEDAGQIMYYREEKKGRILEEGINEAGAMSGWLAAATSYSVHNFTLIPFYIYY CCCCCCCCCCCCCEEEEEECCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHH SMFGFQRVGDLAWAAGDSQARGFLLGATAGRTTLNGEGLQHQDGHSHILSSTVPNCVSYD HHHHHHHHHHHHEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC PTYSYELAVILQDGLRRMYEDNERVFYYLTLMNENYIHGAMPEGAEEGIRKGMYLLREGK CCCCEEHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCC AKTKKSPKVQLLGSGTILREVEAAAELLREDFDVAADVWSVTSFNELRREGLKMDRDEML CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCC NPEEERPANWVEKCLDGRSGPVIASTDYMRAYADQIRPWVNAPYTVLGTDGFGRSDSRQK CCCCCCCHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHH LRHFFEVDRYFVVLAALNALRKEGKVEVGLVKQAIEKYGIDTDKPYPVMH HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MQKRSFFDDVDPAETREWLEALESVVEREGPERAAWLLDVITNEAQEQGVYRTHLNTPYL CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCC NTIAPKDEAAIPGDMFMERRIRSLIRWNAMATVMRANIDNDDELGGHIASFASSATLYDV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEC GFNHFFRAPSEENEGDLVFFQGHSAPGVYARAYLEGRISEEQLDNFRREVDGKGLSSYPH CHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC PWLMPDFWQFPTVSMGLGPIQAIYQAHIMKYLQNRELIQQDNRKVWAFLGDGEMDEPESL CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEECCCCCCCCHHC GALGLAGREKLDNLVFVVNCNLQRLDGPVRGNGKIIQELEGVFRGAGWNVIKVVWGRLWD CCCCCCCHHHHCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH PLLEKDSEGLLRRRMEECVDGEYQAYKKNGGAYTREHFFGENPELKKLVEHMSDDDVYRL HHHCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHCCCCCHHHHHHHHCCCCCEEEC NRGGHDPFKVYAAYHEAVNHTGQPTVILAKTVKGYATGAGEAVNKAHQMKKLDLESLKDF CCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHHH RDRFDMPFTDEQLEDVPYYRPADDSPELRYMKEQRDKLGGYMPVRRRKASQQLTIPGLDV HHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCHHH FANFLEGSGDREISTTMAFVRMMSTLIKDKQIGDRVVPIVPDEARTFGMEGLFRQLGIYS HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHCCCC SGGQKYEPEDAGQIMYYREEKKGRILEEGINEAGAMSGWLAAATSYSVHNFTLIPFYIYY CCCCCCCCCCCCCEEEEEECCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHH SMFGFQRVGDLAWAAGDSQARGFLLGATAGRTTLNGEGLQHQDGHSHILSSTVPNCVSYD HHHHHHHHHHHHEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC PTYSYELAVILQDGLRRMYEDNERVFYYLTLMNENYIHGAMPEGAEEGIRKGMYLLREGK CCCCEEHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCC AKTKKSPKVQLLGSGTILREVEAAAELLREDFDVAADVWSVTSFNELRREGLKMDRDEML CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCC NPEEERPANWVEKCLDGRSGPVIASTDYMRAYADQIRPWVNAPYTVLGTDGFGRSDSRQK CCCCCCCHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHH LRHFFEVDRYFVVLAALNALRKEGKVEVGLVKQAIEKYGIDTDKPYPVMH HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9171401; 10984043 [H]