| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is 110833477
Identifier: 110833477
GI number: 110833477
Start: 676711
End: 678087
Strand: Direct
Name: 110833477
Synonym: ABO_0616
Alternate gene names: NA
Gene position: 676711-678087 (Clockwise)
Preceding gene: 110833476
Following gene: 110833480
Centisome position: 21.69
GC content: 41.25
Gene sequence:
>1377_bases ATGGCTCGTTTGAATAAAGAGGGGGCGTTAGCCTCCTCTTTTTTATTTATCAGGTTTGAATGGCTTGTCCTGTTAGGTTT GTCACTTTCCTTCTTGTTGATGGTTCAGCCATTCTTTCTTCTTGGAGGGCTGCACCCCTTTGATCATCAGCGTTCTATTG AGATCGTCTTCCTTTCCATTTCTTTTCTTTTTTTGGTTCCCTTCATTTCTTTGAGAAAAGTCCCTTTTCTGTTCTGGGTG ATGGGTGCGCTGTCGATGTTAAGTGCTTTTTTGGGAAGTGCTGGTGTGGCCGGTTGGGCACAAGAGACAAGGTTTTTACT ATGGGCCGTCTTGCTATTAATTTTTCCATTTTCTTGGACTTTCGTGGCGACACAAAATAAAAAAATCATTTCTGTGATTT TTTTTGTGGGACTTTCTTTGTATTTTATTTATGTGATTTTTGGAACGTATTTATTGCTGGGCCAGGGCGTGGTTGATCCC GCTTTTGTGATTTCTGGTTTTGCTAATATTAATCATGCTGCAGGTTTTTTGGTTCTTGGTTTTTTTATGCTGCCAGGAAT AGAAAGCTGTTTGTCTGATTACAGAAGGGTTGTTCTTCCTTTTTCCACACTTGTTGGAGGCGGTTTATTTTTATTTGTCC TAATAATTATGGCTAGAGGAAGCTTTCTTTCAGGGTTGGCTGTGGCGATGTTTTTAGTTTTTTTTTGTAAAGGTAGGGCG CGAAAAAAATACTCTATGCGTTTGCTGATGTATGCGGCGATTGGGACTGCATTGTATTTTGTATTTTATTTTGATAGCAG TTTTTTGAGGGTAGAAGAAAATTATATTGCCAGTCTTTATCGAGATACCGGAAGAATTGCTTTGTTTAGAGAGGGGATTC AAGGCTGGTTTGAATCCCCTTTGCTTGGGAATGGGCCGCTTTCGTTTTCTCAGCTCAGTAGTGTTCCTGAAGCACATCCC CACAATATTTTGATTGCCTCGTTGTATGAATATGGTGCTTTGGTAACAATTATTGCTGTTTATTTGCTAATAAAGGCGGC TACAGTTTACCTCAGAGCAGGATATGTGGCCGATCAGTCCATGTTACATATAGTCGGCGGGTCAACGATTGTCTGTTTTC TTTCTTATGCGCAAGTAAGTGGCCTAACCATGATCGCCCCCTCAATGTTATTGCTGGCGCTAGCGGTGGGGTTTGCTTTT GAAAATGTCGTTTCAGAGAGGCCTAGGCCTGATTTCCTGACGAATTTTAGCGGAAAGCGAGCCGTTGGAGCTTTTATGAT TGTGCTGGCCTTCTTTAGCTCGTCAATTTTTTATTATCAAGTCTCGACTGAAAATATATCAGGTGCGCCAAGGTTTTGGT TGCAGGGTAAATTGTAG
Upstream 100 bases:
>100_bases TCCAAGCCTGAGTTCTGGTGGTGGTGTTAGCTGGAGCTGCGCACCTTCTGCTACAAGTATTAACAAGTTCTTGCCAGCTA GCTGCCGCTCTTAATTTCGG
Downstream 100 bases:
>100_bases GAGTCTGAAAAGGGCCTTGGTGTGCCCATGCTCCGTGGTTATTTTGAGGGCTTCCTTACCTTATGCGAAGAGAGAGATCA ATAGCTCTTACATGCTTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 458; Mature: 457
Protein sequence:
>458_residues MARLNKEGALASSFLFIRFEWLVLLGLSLSFLLMVQPFFLLGGLHPFDHQRSIEIVFLSISFLFLVPFISLRKVPFLFWV MGALSMLSAFLGSAGVAGWAQETRFLLWAVLLLIFPFSWTFVATQNKKIISVIFFVGLSLYFIYVIFGTYLLLGQGVVDP AFVISGFANINHAAGFLVLGFFMLPGIESCLSDYRRVVLPFSTLVGGGLFLFVLIIMARGSFLSGLAVAMFLVFFCKGRA RKKYSMRLLMYAAIGTALYFVFYFDSSFLRVEENYIASLYRDTGRIALFREGIQGWFESPLLGNGPLSFSQLSSVPEAHP HNILIASLYEYGALVTIIAVYLLIKAATVYLRAGYVADQSMLHIVGGSTIVCFLSYAQVSGLTMIAPSMLLLALAVGFAF ENVVSERPRPDFLTNFSGKRAVGAFMIVLAFFSSSIFYYQVSTENISGAPRFWLQGKL
Sequences:
>Translated_458_residues MARLNKEGALASSFLFIRFEWLVLLGLSLSFLLMVQPFFLLGGLHPFDHQRSIEIVFLSISFLFLVPFISLRKVPFLFWV MGALSMLSAFLGSAGVAGWAQETRFLLWAVLLLIFPFSWTFVATQNKKIISVIFFVGLSLYFIYVIFGTYLLLGQGVVDP AFVISGFANINHAAGFLVLGFFMLPGIESCLSDYRRVVLPFSTLVGGGLFLFVLIIMARGSFLSGLAVAMFLVFFCKGRA RKKYSMRLLMYAAIGTALYFVFYFDSSFLRVEENYIASLYRDTGRIALFREGIQGWFESPLLGNGPLSFSQLSSVPEAHP HNILIASLYEYGALVTIIAVYLLIKAATVYLRAGYVADQSMLHIVGGSTIVCFLSYAQVSGLTMIAPSMLLLALAVGFAF ENVVSERPRPDFLTNFSGKRAVGAFMIVLAFFSSSIFYYQVSTENISGAPRFWLQGKL >Mature_457_residues ARLNKEGALASSFLFIRFEWLVLLGLSLSFLLMVQPFFLLGGLHPFDHQRSIEIVFLSISFLFLVPFISLRKVPFLFWVM GALSMLSAFLGSAGVAGWAQETRFLLWAVLLLIFPFSWTFVATQNKKIISVIFFVGLSLYFIYVIFGTYLLLGQGVVDPA FVISGFANINHAAGFLVLGFFMLPGIESCLSDYRRVVLPFSTLVGGGLFLFVLIIMARGSFLSGLAVAMFLVFFCKGRAR KKYSMRLLMYAAIGTALYFVFYFDSSFLRVEENYIASLYRDTGRIALFREGIQGWFESPLLGNGPLSFSQLSSVPEAHPH NILIASLYEYGALVTIIAVYLLIKAATVYLRAGYVADQSMLHIVGGSTIVCFLSYAQVSGLTMIAPSMLLLALAVGFAFE NVVSERPRPDFLTNFSGKRAVGAFMIVLAFFSSSIFYYQVSTENISGAPRFWLQGKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50905; Mature: 50774
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARLNKEGALASSFLFIRFEWLVLLGLSLSFLLMVQPFFLLGGLHPFDHQRSIEIVFLSI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHH SFLFLVPFISLRKVPFLFWVMGALSMLSAFLGSAGVAGWAQETRFLLWAVLLLIFPFSWT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCE FVATQNKKIISVIFFVGLSLYFIYVIFGTYLLLGQGVVDPAFVISGFANINHAAGFLVLG EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHH FFMLPGIESCLSDYRRVVLPFSTLVGGGLFLFVLIIMARGSFLSGLAVAMFLVFFCKGRA HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC RKKYSMRLLMYAAIGTALYFVFYFDSSFLRVEENYIASLYRDTGRIALFREGIQGWFESP CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHCCC LLGNGPLSFSQLSSVPEAHPHNILIASLYEYGALVTIIAVYLLIKAATVYLRAGYVADQS CCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC MLHIVGGSTIVCFLSYAQVSGLTMIAPSMLLLALAVGFAFENVVSERPRPDFLTNFSGKR HHEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCH AVGAFMIVLAFFSSSIFYYQVSTENISGAPRFWLQGKL HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEECCC >Mature Secondary Structure ARLNKEGALASSFLFIRFEWLVLLGLSLSFLLMVQPFFLLGGLHPFDHQRSIEIVFLSI CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHH SFLFLVPFISLRKVPFLFWVMGALSMLSAFLGSAGVAGWAQETRFLLWAVLLLIFPFSWT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCE FVATQNKKIISVIFFVGLSLYFIYVIFGTYLLLGQGVVDPAFVISGFANINHAAGFLVLG EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHH FFMLPGIESCLSDYRRVVLPFSTLVGGGLFLFVLIIMARGSFLSGLAVAMFLVFFCKGRA HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC RKKYSMRLLMYAAIGTALYFVFYFDSSFLRVEENYIASLYRDTGRIALFREGIQGWFESP CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHCCC LLGNGPLSFSQLSSVPEAHPHNILIASLYEYGALVTIIAVYLLIKAATVYLRAGYVADQS CCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC MLHIVGGSTIVCFLSYAQVSGLTMIAPSMLLLALAVGFAFENVVSERPRPDFLTNFSGKR HHEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCH AVGAFMIVLAFFSSSIFYYQVSTENISGAPRFWLQGKL HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA