| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110833480
Identifier: 110833480
GI number: 110833480
Start: 680650
End: 682887
Strand: Direct
Name: 110833480
Synonym: ABO_0619
Alternate gene names: NA
Gene position: 680650-682887 (Clockwise)
Preceding gene: 110833477
Following gene: 110833481
Centisome position: 21.81
GC content: 54.51
Gene sequence:
>2238_bases ATGTCCAAGGTTACACAGCTGAAACCGGTTTCCGGGAAGGTCTTGCCAGGCCGTATGCCACGGCCCCTTGAGAAGGTGTG TGCTCGCTATCTTTTCCTGAGTGGCGCTTACCTGGGAGATATGTTGGATGGCGCTGATGATAAGTTGTACGACCTTGCCG AGAGAGAGACAGACGGAGAGCGTGAGCGCTATTTCGAGGCAATGCGTGAGCTGCGTATCCAGCGGTCTGGTTTGGTGGCC AGCTTCAAGCAGGCGCTCAACCATCAGTTTTTAAGCCTAGCGAGGCCGCCGGAAACGCAAACGCTGGAGCAGAACCCGGT AGACCTGGATTCCTTAACGCTGGTCAACGAGGACGAGTTAGAAACCTCCGTGGCGCTGGATAATATGGCTCGCCGGGCCC GTAACGGCTGTAACGAGCAGTTGAAGGTGCTTTGCCACCGTATTGAGTACTTATTTGAAAGCAAGCGGGAGGTGAACGAG CACAACAATCCCCTTGAGCCTCGTCAATTGGTGGCCTGCTTTAGTGAAGGCTTGGAAAAGCTGTCGTTAGATATTAAGGC TCGTCTGATTATTCTCAAGCTGTTTGAGCGGGAAGTGATGGCTGAAACCGGCTATCTGGTCAGTGAGGCCAACAAGGTAT TGATTGATGCGGGGGTGCTTCCGGAGATGAAGTCCGCCCCTATCGCTCCGGCACACAAGCCCGGTTCCCGTTCGCTGGCC AACCAAGGTAATGACAACGTCATGCCCACAGCGGGCAATGCCGGCGTGCACAGTAACGATCAAGTGTTCGGTCTGCTTCA GGAGCTGCTGGTTACCATGCGTGGCATGCAGGCTAGACCGGGGGATGGTGCGTCCGACGTCGCTAGCGAGGCACCTATGG CGGTTATGCAAAACGGGGTGCCTTATATGAACGGTGCTCCGTTGGCCAATGCGGCGTCGGTGCATCAGGTTAATTCGGAT GATCTACTCGGTGTACTGAACCGCTTGCAACGGGTAGAGCGTAGTCTAGGGGAGGATGAAGGTGAAGAGCGTGCCGACCT GAAAACGGACCTATCCGAGTTGCTCGACAATGAGCATGGTGAAGCCATCCACGCACTGGATCAGGCTGATGACGATGTCA TTAATCTGGTGGCCTTGCTATTCGACTTCATTCTGGATGACGAAGGCCTGCCCTCAGACATCAAGGCACTGCTTGGCCGC CTGCAGATCCCGCTGTTGAAAGTGGCGATTATGGATAAGGCCTTCTTTAATAACGACAACCACGAGGCCCGCTTATTACT GAACATGCTGGCCCGAGCAGGCAGCCAGTGGGATCCCCATCTGGGTATTCAGGATGACCTATATCAGCGAATTAATCATG CTGTGCATCGCATCATTGATGACTATGAAGATGATGCCAGCCTGTTCTCCTCATTATTGCAGGAGTTTCAGCAATTTTTC GATAGCCAGAAAACTCGCTCCGACCGTGTGGAACAGCGGGTCCGTGAAGCGGAAGAGGGCAAGGCCCGTGCAGAGCAGGC TCGCCGTGAAGTGGTGACGGTACTGGATAACCGTATGGCTGGACGGCAACTACCGGATGTGGTCGTACGCTTGCTTCGCC AGGGGTGGCAGCAGGCTTTGTATTTGACTTGGTTGCATGAGGGGGAGAATAGTCCTCTGTGGCAGCAGCAGGTGAAGGTA GTGGATGCGGTGGTCTGGAGTGTGCTGGAGCACCGAGATCAGGACGCGCTAGAGAAACTCAAGACGCTCAGCCCCAAGTT GCTGAAGACCTTGCATGAGGGCCTGACGAAGATTAATCACGATGCGATGGAAACTAAGCAGTTGTTGGTTAAATTCCGTG ATGTGCACCACCGGTTACTCAAGGGCTTGCAGACCGAGAGGGTGGCAGTGGAGCCGGAGCTGCCCGCCCAACGGGCACAG CCAGAGACCGCTCCTGAATTGCCAGAAAACCATTTTTTGGTGAAAAAATGCAGCCAGCTGGCACCCGGCCAATGGATAGA AATTCAGGACAACGACGAACCCCGTCGCGCGAAGTTGGCGGCGAATATCCGTGCTGGCGTGAAAATAGTGTTCACCAACC GCCGTGGCATTAAGGTACAGGAGTATTCCGCTTACACCTTGGCCGTTGCCCTGCATAATGGGGCTGTTAAACTCATCGAT GAAGGAGCCCTGTTTGATCGGGCTTTGGAAGCAGTTATTGGCGACCTGCGTCGTATGCAAGGCAATGTGCAGCACTAA
Upstream 100 bases:
>100_bases CAATATTGTTACAGGCTGAGAGCGTTATAGTAATAAAGCATTAATGCGTTAGTTCCATGTTTCTCACCAGCCTGTCGCGG GTTCGCCTGCCGGGGGAGCA
Downstream 100 bases:
>100_bases GGGCTAAAGTGCAGCACCGGCTTCCTTAGGCGCAGGCAAGAGGAGTTTGCGCGGGTGCTTACCCTTTCCGAACATCGAGT CGACCAGGCGCAATGGTGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 745; Mature: 744
Protein sequence:
>745_residues MSKVTQLKPVSGKVLPGRMPRPLEKVCARYLFLSGAYLGDMLDGADDKLYDLAERETDGERERYFEAMRELRIQRSGLVA SFKQALNHQFLSLARPPETQTLEQNPVDLDSLTLVNEDELETSVALDNMARRARNGCNEQLKVLCHRIEYLFESKREVNE HNNPLEPRQLVACFSEGLEKLSLDIKARLIILKLFEREVMAETGYLVSEANKVLIDAGVLPEMKSAPIAPAHKPGSRSLA NQGNDNVMPTAGNAGVHSNDQVFGLLQELLVTMRGMQARPGDGASDVASEAPMAVMQNGVPYMNGAPLANAASVHQVNSD DLLGVLNRLQRVERSLGEDEGEERADLKTDLSELLDNEHGEAIHALDQADDDVINLVALLFDFILDDEGLPSDIKALLGR LQIPLLKVAIMDKAFFNNDNHEARLLLNMLARAGSQWDPHLGIQDDLYQRINHAVHRIIDDYEDDASLFSSLLQEFQQFF DSQKTRSDRVEQRVREAEEGKARAEQARREVVTVLDNRMAGRQLPDVVVRLLRQGWQQALYLTWLHEGENSPLWQQQVKV VDAVVWSVLEHRDQDALEKLKTLSPKLLKTLHEGLTKINHDAMETKQLLVKFRDVHHRLLKGLQTERVAVEPELPAQRAQ PETAPELPENHFLVKKCSQLAPGQWIEIQDNDEPRRAKLAANIRAGVKIVFTNRRGIKVQEYSAYTLAVALHNGAVKLID EGALFDRALEAVIGDLRRMQGNVQH
Sequences:
>Translated_745_residues MSKVTQLKPVSGKVLPGRMPRPLEKVCARYLFLSGAYLGDMLDGADDKLYDLAERETDGERERYFEAMRELRIQRSGLVA SFKQALNHQFLSLARPPETQTLEQNPVDLDSLTLVNEDELETSVALDNMARRARNGCNEQLKVLCHRIEYLFESKREVNE HNNPLEPRQLVACFSEGLEKLSLDIKARLIILKLFEREVMAETGYLVSEANKVLIDAGVLPEMKSAPIAPAHKPGSRSLA NQGNDNVMPTAGNAGVHSNDQVFGLLQELLVTMRGMQARPGDGASDVASEAPMAVMQNGVPYMNGAPLANAASVHQVNSD DLLGVLNRLQRVERSLGEDEGEERADLKTDLSELLDNEHGEAIHALDQADDDVINLVALLFDFILDDEGLPSDIKALLGR LQIPLLKVAIMDKAFFNNDNHEARLLLNMLARAGSQWDPHLGIQDDLYQRINHAVHRIIDDYEDDASLFSSLLQEFQQFF DSQKTRSDRVEQRVREAEEGKARAEQARREVVTVLDNRMAGRQLPDVVVRLLRQGWQQALYLTWLHEGENSPLWQQQVKV VDAVVWSVLEHRDQDALEKLKTLSPKLLKTLHEGLTKINHDAMETKQLLVKFRDVHHRLLKGLQTERVAVEPELPAQRAQ PETAPELPENHFLVKKCSQLAPGQWIEIQDNDEPRRAKLAANIRAGVKIVFTNRRGIKVQEYSAYTLAVALHNGAVKLID EGALFDRALEAVIGDLRRMQGNVQH >Mature_744_residues SKVTQLKPVSGKVLPGRMPRPLEKVCARYLFLSGAYLGDMLDGADDKLYDLAERETDGERERYFEAMRELRIQRSGLVAS FKQALNHQFLSLARPPETQTLEQNPVDLDSLTLVNEDELETSVALDNMARRARNGCNEQLKVLCHRIEYLFESKREVNEH NNPLEPRQLVACFSEGLEKLSLDIKARLIILKLFEREVMAETGYLVSEANKVLIDAGVLPEMKSAPIAPAHKPGSRSLAN QGNDNVMPTAGNAGVHSNDQVFGLLQELLVTMRGMQARPGDGASDVASEAPMAVMQNGVPYMNGAPLANAASVHQVNSDD LLGVLNRLQRVERSLGEDEGEERADLKTDLSELLDNEHGEAIHALDQADDDVINLVALLFDFILDDEGLPSDIKALLGRL QIPLLKVAIMDKAFFNNDNHEARLLLNMLARAGSQWDPHLGIQDDLYQRINHAVHRIIDDYEDDASLFSSLLQEFQQFFD SQKTRSDRVEQRVREAEEGKARAEQARREVVTVLDNRMAGRQLPDVVVRLLRQGWQQALYLTWLHEGENSPLWQQQVKVV DAVVWSVLEHRDQDALEKLKTLSPKLLKTLHEGLTKINHDAMETKQLLVKFRDVHHRLLKGLQTERVAVEPELPAQRAQP ETAPELPENHFLVKKCSQLAPGQWIEIQDNDEPRRAKLAANIRAGVKIVFTNRRGIKVQEYSAYTLAVALHNGAVKLIDE GALFDRALEAVIGDLRRMQGNVQH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 83770; Mature: 83639
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKVTQLKPVSGKVLPGRMPRPLEKVCARYLFLSGAYLGDMLDGADDKLYDLAERETDGE CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCH RERYFEAMRELRIQRSGLVASFKQALNHQFLSLARPPETQTLEQNPVDLDSLTLVNEDEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHH ETSVALDNMARRARNGCNEQLKVLCHRIEYLFESKREVNEHNNPLEPRQLVACFSEGLEK HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH LSLDIKARLIILKLFEREVMAETGYLVSEANKVLIDAGVLPEMKSAPIAPAHKPGSRSLA HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEECCCCCCHHCCCCCCCCCCCCCHHH NQGNDNVMPTAGNAGVHSNDQVFGLLQELLVTMRGMQARPGDGASDVASEAPMAVMQNGV CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHCCC PYMNGAPLANAASVHQVNSDDLLGVLNRLQRVERSLGEDEGEERADLKTDLSELLDNEHG CCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC EAIHALDQADDDVINLVALLFDFILDDEGLPSDIKALLGRLQIPLLKVAIMDKAFFNNDN HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC HEARLLLNMLARAGSQWDPHLGIQDDLYQRINHAVHRIIDDYEDDASLFSSLLQEFQQFF HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH DSQKTRSDRVEQRVREAEEGKARAEQARREVVTVLDNRMAGRQLPDVVVRLLRQGWQQAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH YLTWLHEGENSPLWQQQVKVVDAVVWSVLEHRDQDALEKLKTLSPKLLKTLHEGLTKINH HHHHEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHCH DAMETKQLLVKFRDVHHRLLKGLQTERVAVEPELPAQRAQPETAPELPENHFLVKKCSQL HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHCCCCCCCCCCCCCHHHHHHHHC APGQWIEIQDNDEPRRAKLAANIRAGVKIVFTNRRGIKVQEYSAYTLAVALHNGAVKLID CCCCEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEECCCEEEEEEEECCCEEEEC EGALFDRALEAVIGDLRRMQGNVQH CHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SKVTQLKPVSGKVLPGRMPRPLEKVCARYLFLSGAYLGDMLDGADDKLYDLAERETDGE CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCH RERYFEAMRELRIQRSGLVASFKQALNHQFLSLARPPETQTLEQNPVDLDSLTLVNEDEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHH ETSVALDNMARRARNGCNEQLKVLCHRIEYLFESKREVNEHNNPLEPRQLVACFSEGLEK HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH LSLDIKARLIILKLFEREVMAETGYLVSEANKVLIDAGVLPEMKSAPIAPAHKPGSRSLA HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEECCCCCCHHCCCCCCCCCCCCCHHH NQGNDNVMPTAGNAGVHSNDQVFGLLQELLVTMRGMQARPGDGASDVASEAPMAVMQNGV CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHCCC PYMNGAPLANAASVHQVNSDDLLGVLNRLQRVERSLGEDEGEERADLKTDLSELLDNEHG CCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC EAIHALDQADDDVINLVALLFDFILDDEGLPSDIKALLGRLQIPLLKVAIMDKAFFNNDN HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC HEARLLLNMLARAGSQWDPHLGIQDDLYQRINHAVHRIIDDYEDDASLFSSLLQEFQQFF HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH DSQKTRSDRVEQRVREAEEGKARAEQARREVVTVLDNRMAGRQLPDVVVRLLRQGWQQAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH YLTWLHEGENSPLWQQQVKVVDAVVWSVLEHRDQDALEKLKTLSPKLLKTLHEGLTKINH HHHHEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHCH DAMETKQLLVKFRDVHHRLLKGLQTERVAVEPELPAQRAQPETAPELPENHFLVKKCSQL HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHCCCCCCCCCCCCCHHHHHHHHC APGQWIEIQDNDEPRRAKLAANIRAGVKIVFTNRRGIKVQEYSAYTLAVALHNGAVKLID CCCCEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEECCCEEEEEEEECCCEEEEC EGALFDRALEAVIGDLRRMQGNVQH CHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA