Click here to switch to the map view.

The map label for this gene is yhcM [H]

Identifier: 110833431

GI number: 110833431

Start: 628593

End: 629675

Strand: Direct

Name: yhcM [H]

Synonym: ABO_0570

Alternate gene names: 110833431

Gene position: 628593-629675 (Clockwise)

Preceding gene: 110833430

Following gene: 110833432

Centisome position: 20.15

GC content: 53.09

Gene sequence:

>1083_bases
ATGACCCCTCTTGAGCAATATAAGGCCGACCTAGAGCGAGCTGACTTCTTTCAGGATCCGGCCCAAGAGCGGGCGGTCGC
CGCGCTGGATGAGCTTTATCATCGATTACTTGCAGAGCCTGCCTCGGGAGGGCTATTTGGGCGTTTCCGTAAAGCACGGC
CCCAGATGGGCTTGTATATGTGGGGGGGAGTAGGTCGTGGAAAAACCTATCTGATGGATGTTTTTTTCCAGACGCTGCCG
TTCGAGGAAAAGCGTCGCATGCATTTTCATCGCTTCATGCAGAAGGTGCATCGTGAAATGCGTGAACGGCAGGGGGAAAA
AAACCCACTGATCAGTATCGCTCGCAAGTTTGCCAGCCAGGCTAGGGTGCTGTGTTTTGACGAATTCTTCGTTACAGATA
TCACCGATGCGATGATCCTGGCCGGCCTGATGCAGGAACTGTTTGCCAACGGTGTAACCCTGGTTGCCACCTCTAACATT
GAGCCAGATGGTTTATACAAGGATGGGCTGCAACGGGCTCGCTTTCTTCCCGCCATTGATTTGCTTAAAGAGCACACTCA
AGTGTTGAACGTGGATGGGGGGAACGACTACCGCTTGCGGCTACTGGAACAGGCGGAGCTTTATCACTGCCCTTTGGGGA
AAGGGGCCGATGCGTTTCTTCAGGAGCGTTTCGAGACATTGGAACAGGATCACTCCCGGCATCGTGATCGTGGCAATGTG
CTTATTGAAGGCCGTAAGATCGCCACTGTTATCTGCGCTGATGATGTGGTCTGGTTTGAGTTCAAGGAGTTGTGCGATGG
TCCGCGCAGCCAGACGGATTACATCGAAATCGCTCGTGAATTCCACACGGTATTGCTCGCCAATGTGGAGCAAATGGGGG
CCAGTAAGGACGATATGGCCCGGCGATTCATCAATCTGGTGGATGAATTCTACGACCGTGCGGTGAAGCTTGTGATCACC
GCAGAAGTGCCCATTGAGGATATCTATGCCGGAGGGCGTTTGGATTTCGAATTTGAGCGTACCTGTTCTCGCCTTCAGGA
GATGCAATCCTCCGAATATTTAGGGCGCGAACACCGCGCCTGA

Upstream 100 bases:

>100_bases
GTCAGTTGGTGGCCTCAGCGCTACATTGACCGCCCCTTGTGGGGCCTATTTCAGGCCCGGAACCGGTTTCAACTACTACA
TAGTGGCAGGTTTGCGAACC

Downstream 100 bases:

>100_bases
TCAGCTTGTGGTTGCAAGGTCATTGTCCGGTTTTCATCACTGGCCGTGGGGGTGAGCGTTTTGGTCATTGCTCAACGGCA
AGCTCTATCAACATTATGGA

Product: AFG1-like ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MTPLEQYKADLERADFFQDPAQERAVAALDELYHRLLAEPASGGLFGRFRKARPQMGLYMWGGVGRGKTYLMDVFFQTLP
FEEKRRMHFHRFMQKVHREMRERQGEKNPLISIARKFASQARVLCFDEFFVTDITDAMILAGLMQELFANGVTLVATSNI
EPDGLYKDGLQRARFLPAIDLLKEHTQVLNVDGGNDYRLRLLEQAELYHCPLGKGADAFLQERFETLEQDHSRHRDRGNV
LIEGRKIATVICADDVVWFEFKELCDGPRSQTDYIEIAREFHTVLLANVEQMGASKDDMARRFINLVDEFYDRAVKLVIT
AEVPIEDIYAGGRLDFEFERTCSRLQEMQSSEYLGREHRA

Sequences:

>Translated_360_residues
MTPLEQYKADLERADFFQDPAQERAVAALDELYHRLLAEPASGGLFGRFRKARPQMGLYMWGGVGRGKTYLMDVFFQTLP
FEEKRRMHFHRFMQKVHREMRERQGEKNPLISIARKFASQARVLCFDEFFVTDITDAMILAGLMQELFANGVTLVATSNI
EPDGLYKDGLQRARFLPAIDLLKEHTQVLNVDGGNDYRLRLLEQAELYHCPLGKGADAFLQERFETLEQDHSRHRDRGNV
LIEGRKIATVICADDVVWFEFKELCDGPRSQTDYIEIAREFHTVLLANVEQMGASKDDMARRFINLVDEFYDRAVKLVIT
AEVPIEDIYAGGRLDFEFERTCSRLQEMQSSEYLGREHRA
>Mature_359_residues
TPLEQYKADLERADFFQDPAQERAVAALDELYHRLLAEPASGGLFGRFRKARPQMGLYMWGGVGRGKTYLMDVFFQTLPF
EEKRRMHFHRFMQKVHREMRERQGEKNPLISIARKFASQARVLCFDEFFVTDITDAMILAGLMQELFANGVTLVATSNIE
PDGLYKDGLQRARFLPAIDLLKEHTQVLNVDGGNDYRLRLLEQAELYHCPLGKGADAFLQERFETLEQDHSRHRDRGNVL
IEGRKIATVICADDVVWFEFKELCDGPRSQTDYIEIAREFHTVLLANVEQMGASKDDMARRFINLVDEFYDRAVKLVITA
EVPIEDIYAGGRLDFEFERTCSRLQEMQSSEYLGREHRA

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=405, Percent_Identity=34.0740740740741, Blast_Score=229, Evalue=4e-60,
Organism=Escherichia coli, GI1789627, Length=373, Percent_Identity=50.6702412868633, Blast_Score=356, Evalue=1e-99,
Organism=Caenorhabditis elegans, GI17505769, Length=377, Percent_Identity=32.3607427055703, Blast_Score=200, Evalue=9e-52,
Organism=Saccharomyces cerevisiae, GI6320783, Length=400, Percent_Identity=29.5, Blast_Score=171, Evalue=2e-43,
Organism=Drosophila melanogaster, GI20129913, Length=427, Percent_Identity=33.4894613583138, Blast_Score=190, Evalue=1e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 41664; Mature: 41533

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPLEQYKADLERADFFQDPAQERAVAALDELYHRLLAEPASGGLFGRFRKARPQMGLYM
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEEE
WGGVGRGKTYLMDVFFQTLPFEEKRRMHFHRFMQKVHREMRERQGEKNPLISIARKFASQ
ECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
ARVLCFDEFFVTDITDAMILAGLMQELFANGVTLVATSNIEPDGLYKDGLQRARFLPAID
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
LLKEHTQVLNVDGGNDYRLRLLEQAELYHCPLGKGADAFLQERFETLEQDHSRHRDRGNV
HHHHHHHEEECCCCCCHHEEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE
LIEGRKIATVICADDVVWFEFKELCDGPRSQTDYIEIAREFHTVLLANVEQMGASKDDMA
EEECCEEEEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
RRFINLVDEFYDRAVKLVITAEVPIEDIYAGGRLDFEFERTCSRLQEMQSSEYLGREHRA
HHHHHHHHHHHHHHEEEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TPLEQYKADLERADFFQDPAQERAVAALDELYHRLLAEPASGGLFGRFRKARPQMGLYM
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEEE
WGGVGRGKTYLMDVFFQTLPFEEKRRMHFHRFMQKVHREMRERQGEKNPLISIARKFASQ
ECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
ARVLCFDEFFVTDITDAMILAGLMQELFANGVTLVATSNIEPDGLYKDGLQRARFLPAID
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
LLKEHTQVLNVDGGNDYRLRLLEQAELYHCPLGKGADAFLQERFETLEQDHSRHRDRGNV
HHHHHHHEEECCCCCCHHEEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE
LIEGRKIATVICADDVVWFEFKELCDGPRSQTDYIEIAREFHTVLLANVEQMGASKDDMA
EEECCEEEEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
RRFINLVDEFYDRAVKLVITAEVPIEDIYAGGRLDFEFERTCSRLQEMQSSEYLGREHRA
HHHHHHHHHHHHHHEEEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]