Click here to switch to the map view.

The map label for this gene is yfjP [H]

Identifier: 110635354

GI number: 110635354

Start: 3298497

End: 3299141

Strand: Reverse

Name: yfjP [H]

Synonym: Meso_3025

Alternate gene names: 110635354

Gene position: 3299141-3298497 (Counterclockwise)

Preceding gene: 110635357

Following gene: 110635353

Centisome position: 74.77

GC content: 65.27

Gene sequence:

>645_bases
ATGGAGCGAATCGAAACGGCAGCCGATATCAGGCGCGGACTGGACGCCTTGGTTCTGCTCGACCGAAGGCTTGGGCCTGT
GCGAGCTGTCGCGGGCGCCGTGCCGCTGCGGCGCGGCCCCCCAGGCTTCCATAGCCTTGCCTCGGTCATTGTCTCCCAGC
AGGTCTCGCGAGCAAGCGCCGACGCGATTTTCGCGAGGCTTTCCCAATTGGTAAAGCCGTTGACGCCCGACGGATTTCTC
GCCGCCGGCGAGAGCGTGATGGTGAAAGCGGGACTATCGCGGGCGAAGCAACGCACCTTGACTGCGCTCTCTGCGGCGCT
GCGGGACAAGGCGCTCGACCTTGACGATCTCGGTAACCTTCCGCCGGCAGATGCCATGGAGGCGTTGACAGTCATTCCAG
GCATCGGTCCGTGGACCGCACAGGTTTACCTGCTGGTTGCTGCCGGCCATCCGGACATCTTCCCCGCGGGCGACATTGCC
TTGCAGGCGGCGGTTGGCCATGCGCTGGCGCTCGATGCGCGCCCAAAGGCGAATCAGCTCGCCCTCATAGCCGAACCGTG
GAGCCCGTGGCGCTCTGTCGCAGCCCGTCTTTTTTGGGCGTATTATCGTGAGATCCGTGGCGCGGAAGCCGCTCCGGCGG
CCTGA

Upstream 100 bases:

>100_bases
ACAGGAACCGTCATTGCAGCGGTGAGCCTTGCAGGAAATGGATTGTAGGGGCCATCCCTGCATTGCTAGGCTTGCCCGAA
GCTAAGCGCAAGGATTCCCC

Downstream 100 bases:

>100_bases
AATACCGAAAATTCAGCGAAATGGGCGGTTTGGCCTATCGGAACTACAATACCGGCTTCACATTCCTGTCACTGCGGGAT
TACATTATCCGCGCCGATCG

Product: HhH-GPD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MERIETAADIRRGLDALVLLDRRLGPVRAVAGAVPLRRGPPGFHSLASVIVSQQVSRASADAIFARLSQLVKPLTPDGFL
AAGESVMVKAGLSRAKQRTLTALSAALRDKALDLDDLGNLPPADAMEALTVIPGIGPWTAQVYLLVAAGHPDIFPAGDIA
LQAAVGHALALDARPKANQLALIAEPWSPWRSVAARLFWAYYREIRGAEAAPAA

Sequences:

>Translated_214_residues
MERIETAADIRRGLDALVLLDRRLGPVRAVAGAVPLRRGPPGFHSLASVIVSQQVSRASADAIFARLSQLVKPLTPDGFL
AAGESVMVKAGLSRAKQRTLTALSAALRDKALDLDDLGNLPPADAMEALTVIPGIGPWTAQVYLLVAAGHPDIFPAGDIA
LQAAVGHALALDARPKANQLALIAEPWSPWRSVAARLFWAYYREIRGAEAAPAA
>Mature_214_residues
MERIETAADIRRGLDALVLLDRRLGPVRAVAGAVPLRRGPPGFHSLASVIVSQQVSRASADAIFARLSQLVKPLTPDGFL
AAGESVMVKAGLSRAKQRTLTALSAALRDKALDLDDLGNLPPADAMEALTVIPGIGPWTAQVYLLVAAGHPDIFPAGDIA
LQAAVGHALALDARPKANQLALIAEPWSPWRSVAARLFWAYYREIRGAEAAPAA

Specific function: Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine, 3-methylguanine, 7-methylguanine, O2- methylthymine, and O2-methylcytosine from the damaged DNA polymer formed by alkylation lesions [H]

COG id: COG0122

COG function: function code L; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alkylbase DNA glycosidase alkA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011257
- InterPro:   IPR003265
- InterPro:   IPR003583
- InterPro:   IPR023170 [H]

Pfam domain/function: PF00730 HhH-GPD [H]

EC number: =3.2.2.21 [H]

Molecular weight: Translated: 22588; Mature: 22588

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERIETAADIRRGLDALVLLDRRLGPVRAVAGAVPLRRGPPGFHSLASVIVSQQVSRASA
CCHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
DAIFARLSQLVKPLTPDGFLAAGESVMVKAGLSRAKQRTLTALSAALRDKALDLDDLGNL
HHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC
PPADAMEALTVIPGIGPWTAQVYLLVAAGHPDIFPAGDIALQAAVGHALALDARPKANQL
CCHHHHHHHHHCCCCCCHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCE
ALIAEPWSPWRSVAARLFWAYYREIRGAEAAPAA
EEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MERIETAADIRRGLDALVLLDRRLGPVRAVAGAVPLRRGPPGFHSLASVIVSQQVSRASA
CCHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
DAIFARLSQLVKPLTPDGFLAAGESVMVKAGLSRAKQRTLTALSAALRDKALDLDDLGNL
HHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC
PPADAMEALTVIPGIGPWTAQVYLLVAAGHPDIFPAGDIALQAAVGHALALDARPKANQL
CCHHHHHHHHHCCCCCCHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCE
ALIAEPWSPWRSVAARLFWAYYREIRGAEAAPAA
EEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]