Click here to switch to the map view.

The map label for this gene is yfkH [H]

Identifier: 110635357

GI number: 110635357

Start: 3301118

End: 3301969

Strand: Reverse

Name: yfkH [H]

Synonym: Meso_3028

Alternate gene names: 110635357

Gene position: 3301969-3301118 (Counterclockwise)

Preceding gene: 110635365

Following gene: 110635354

Centisome position: 74.83

GC content: 59.74

Gene sequence:

>852_bases
GTGCGGAAGCTGGTGGCGCTAAGAAGGATAGTCAGAGACGCGTTCGGCCATTTCAACGCAGACGATGGCTGGGCTATGGC
CAGTCATCTGGCGGTAAGCGCCATCATGGCGCTTTTTCCGTTCCTCATCTTCGCTGCGGCGCTTGCGAGCTTTCTCGGGG
CAGATGCGTTTGCCGATACCGCAGTTCACATCGTCTTCGACACCTGGCCCAAGGAGGTGGCGGAGCCGCTCGCCCGAGAG
GTCCGCAACGTGCTCGGGGTCAGGCGCGGCGACGTGCTTACCTTCGGTGTTGTGCTTGCGGCATTCTTCGCCTCGAATGG
TGTGGAGGCATTGAGGCTTTCCCTCAATCGCGCCTATCGGGTGGAGGAACGGCGCTCAATGATATTTCTGCGCCTGCAAA
GCCTTGGCTTCGTGCTGATCGCCACCTTGGGGTTTACGGCCATCAGCGTGCTCCTCGTCATCGCGCCCGTGGCCGCCAAT
ATAGCCGTCTCCCGCATCGAGTGGATCGAGCCCTACATGGGAACGATCACGCTCTGGCGATATATCGTCGCGGTGGTGGT
TCTGGTTTTTGCGCTGGTTGTGGTGCATATCTGGCTGCCGGCCGGCAGCCGCAAGCTGACCGACATCATCCCCGGCATCA
TTTTCACGCTATTGGGCTGGATCGCCGGATCCAGCATATTTGCCGCGTATCTCGGGCGCTTCAGCAGCTATACGACGACC
TATGCGGGCCTGGCCTCAATCATGGTGGCCGTCGTCTTCCTCTATATCATCTCAGCGATTTTCATTCTCGGCGGTGAAAT
CAATGCCGCCATTATGCGTTATCGCGAGGCGAGGCGGGCGGTGGCGGGATGA

Upstream 100 bases:

>100_bases
TTTCATAAGCGGCCGATTCGTGGAGGCTTGTTGTTTATCAGCTACACGGCTTCACATATTTGAGATACCCGAGAACCGGA
CCGGTCGGAAGGATTCGTGT

Downstream 100 bases:

>100_bases
GCGGTGGCGAGCGCCACCCCGAGCGTGGTGATCGCCATTCCTCCGATTTGGATCAGCGTCAGCGTTTCTCCAAACAGCGC
CCATGCCATGACGGCCGTTA

Product: putative ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MRKLVALRRIVRDAFGHFNADDGWAMASHLAVSAIMALFPFLIFAAALASFLGADAFADTAVHIVFDTWPKEVAEPLARE
VRNVLGVRRGDVLTFGVVLAAFFASNGVEALRLSLNRAYRVEERRSMIFLRLQSLGFVLIATLGFTAISVLLVIAPVAAN
IAVSRIEWIEPYMGTITLWRYIVAVVVLVFALVVVHIWLPAGSRKLTDIIPGIIFTLLGWIAGSSIFAAYLGRFSSYTTT
YAGLASIMVAVVFLYIISAIFILGGEINAAIMRYREARRAVAG

Sequences:

>Translated_283_residues
MRKLVALRRIVRDAFGHFNADDGWAMASHLAVSAIMALFPFLIFAAALASFLGADAFADTAVHIVFDTWPKEVAEPLARE
VRNVLGVRRGDVLTFGVVLAAFFASNGVEALRLSLNRAYRVEERRSMIFLRLQSLGFVLIATLGFTAISVLLVIAPVAAN
IAVSRIEWIEPYMGTITLWRYIVAVVVLVFALVVVHIWLPAGSRKLTDIIPGIIFTLLGWIAGSSIFAAYLGRFSSYTTT
YAGLASIMVAVVFLYIISAIFILGGEINAAIMRYREARRAVAG
>Mature_283_residues
MRKLVALRRIVRDAFGHFNADDGWAMASHLAVSAIMALFPFLIFAAALASFLGADAFADTAVHIVFDTWPKEVAEPLARE
VRNVLGVRRGDVLTFGVVLAAFFASNGVEALRLSLNRAYRVEERRSMIFLRLQSLGFVLIATLGFTAISVLLVIAPVAAN
IAVSRIEWIEPYMGTITLWRYIVAVVVLVFALVVVHIWLPAGSRKLTDIIPGIIFTLLGWIAGSSIFAAYLGRFSSYTTT
YAGLASIMVAVVFLYIISAIFILGGEINAAIMRYREARRAVAG

Specific function: Unknown

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: NA

Molecular weight: Translated: 30944; Mature: 30944

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]