| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
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The map label for this gene is hyuB [H]
Identifier: 110634980
GI number: 110634980
Start: 2859929
End: 2861872
Strand: Reverse
Name: hyuB [H]
Synonym: Meso_2646
Alternate gene names: 110634980
Gene position: 2861872-2859929 (Counterclockwise)
Preceding gene: 110634981
Following gene: 110634979
Centisome position: 64.86
GC content: 59.31
Gene sequence:
>1944_bases ATGGATCCCGTTTTCACCGAAGTGATGAAACACCGTTTTGCAGCGATCGCCGACGAAGCGAGCAATACGGTCTATCGCAC GGCGTTCACGACCTTCGTCAAGCAAACGCAGGATTACCAAATCGCGCTTGCGGCAATTGAAGGCGAATTCTTCGCCTTTC CCGTTCAATCGGGAATGATGTCGAACCTCTGCCACAACATTCGGCCGGTCATCGACATGTTCGGCATCGAAAATCTCAAA CCGGGCGACGTGATCTTCACCAACGATCCCTTTACCGGGAACGGCCTCGTCACCCACATGATGGATATCCATCTGATCCG GCCGATCTTCTACAAGGACAAGCTCGTCTGCTTTTCCTGGTCGTTCATCCACGCGTCCGACGTCGGCGGATCCGTGCCGG GCAGTATCTCTCCAACGAACTCCGAGATCTTCCAGGAGGGCCTGCGCATCGCTCCAACCTTCCTCTACCGGGAGGGCAAA CTAAACAAGGAGCTGTGGAGGATTTTCGAGGACAACACGCGTATCCCGGACCTCATCTGGGGCGATATCGAGGCCATGGT GGCGGGCCATCTGCAGCTGGAGCAGCGCGTCACCGAGCTTTGCAATCGCCTCGGTCTGGAAAAGCTCAATCAAGGAATCA ACGACGTCCTAAAGCTGTCGGAGATCAGGGCGCGCGAAATCATCGGCGCCATGACCGACGGCGTCTATGAGTTTCACGAC TATCTGGAATCCTATTTCCCCAACGAAGTCATCTTCGTAAACATCAAGATGACGGTGAAGGGCGACGAACTCGAAATAGA CTACGAGGGAAGCGATCCGCAATTGCCGCTGGCGATGAATCTCGTTGCGGGCGATGCCAAGGCGCACCCCTTCCTCTGCC ATCCGCTCGTCAACTACATCATCACTGCGGCGGACGACATTCCACGCACGGGCGCCATGCTGCGGTCCGTGACCATCAAG GCGCCTAAGGGCACGCTTTGCAATGCCGAATTCCCGGCAGCGGGCGGAAACCGCATGGTGTCGGTCAGCCGCTTCTACGA TGTGCTTCTCGGATGCATGAACCAGGCGGTTCCAGGCGGCCTGGTCTCGGCGGGCTATGGTATCGCGGGTATCATCGTCG CCTCTTCGCTCGATCCGAAGACGGGTAAGCGACATGTCAGCACGGTCGAGCCATTCATGGGTGGGGGTGGCGGTCGCTGC AATGGCGACGGCATGGATGCCGTCGACGTGCCGCGTGGCGCTTTGCGAAGCGCGCCGATCGAAACGGTCGAGATCGAGCA GCCCTTCGTCATTCGCCGGTTCGGCGTTGAGAACGATACGCAGGGTGCCGGCAAGTATAGAGGCGGAGGCGCGGCGGTCC TGACGATCGAGAACCGGGGGCCTTCCACCATGGTTACGGTTCGCGGTTTGGACCGCTTCGAATTCCAGCCCTGGGGCTTC GGCGGCGGAAAGTGCGGCCAGAGCGGCTCCGTCATCCTGAATCCGAAGACGGCTGCGGAAAAGGATATCGGAAAGGTCAC CGTCCTTGAGCTGGTTCCCGGTGACATTCTTCACATGGTCACGCCGACCGGCGGCGGCTTCGGCGACCCGCTCGATCGTG ACGTGGCCATGGTCCTCAAAGACGTGCAGCAGGAATTCGTCTCGGCGGAACGGGCTCGCAGCGATTACGGCGTCGTCGTG GAAGGCGGAGCTGTCAACCTGGCGGCGACGGAGAGCTTGCGCTTGCAGATGAAGAAGGGTCTGCGCGACGACACGTATGC TTATGGAACGAAACGCGTTGAAATCGAAAAGGTATGGGACTCCAAGGCCCGGATCGCCCTTGCCAACGCGGTTTCCCATG TTCCGGCAACATTGCGTCACAAGGCCAAGACCGATCTCGCCAAGAAGGTGGAGGCCTTGGGTCAGCCGATTACGGCCGCG CTTGTGAACAGCGTCGCCGCTTGA
Upstream 100 bases:
>100_bases CCATCATCGAGCAGGAAACCATCACCGTTCTCGTTCCTCCCGCGTTCGACGTGACGATCGGTCGATACGACGACGTCATT CTTGAAAGAAGGGCATAACA
Downstream 100 bases:
>100_bases GCTTTTTGGCTCCGTCTGACGAGGCGGAGCCAAAATTGCCTATAGCCGGGGTATTACCATGGGTCAGGCGCAGAAGATTC TGCACAGCAGTCACTGGGGG
Product: hydantoinase B/oxoprolinase
Products: ADP; phosphate; N-carbamoylsarcosine
Alternate protein names: ORF3 [H]
Number of amino acids: Translated: 647; Mature: 647
Protein sequence:
>647_residues MDPVFTEVMKHRFAAIADEASNTVYRTAFTTFVKQTQDYQIALAAIEGEFFAFPVQSGMMSNLCHNIRPVIDMFGIENLK PGDVIFTNDPFTGNGLVTHMMDIHLIRPIFYKDKLVCFSWSFIHASDVGGSVPGSISPTNSEIFQEGLRIAPTFLYREGK LNKELWRIFEDNTRIPDLIWGDIEAMVAGHLQLEQRVTELCNRLGLEKLNQGINDVLKLSEIRAREIIGAMTDGVYEFHD YLESYFPNEVIFVNIKMTVKGDELEIDYEGSDPQLPLAMNLVAGDAKAHPFLCHPLVNYIITAADDIPRTGAMLRSVTIK APKGTLCNAEFPAAGGNRMVSVSRFYDVLLGCMNQAVPGGLVSAGYGIAGIIVASSLDPKTGKRHVSTVEPFMGGGGGRC NGDGMDAVDVPRGALRSAPIETVEIEQPFVIRRFGVENDTQGAGKYRGGGAAVLTIENRGPSTMVTVRGLDRFEFQPWGF GGGKCGQSGSVILNPKTAAEKDIGKVTVLELVPGDILHMVTPTGGGFGDPLDRDVAMVLKDVQQEFVSAERARSDYGVVV EGGAVNLAATESLRLQMKKGLRDDTYAYGTKRVEIEKVWDSKARIALANAVSHVPATLRHKAKTDLAKKVEALGQPITAA LVNSVAA
Sequences:
>Translated_647_residues MDPVFTEVMKHRFAAIADEASNTVYRTAFTTFVKQTQDYQIALAAIEGEFFAFPVQSGMMSNLCHNIRPVIDMFGIENLK PGDVIFTNDPFTGNGLVTHMMDIHLIRPIFYKDKLVCFSWSFIHASDVGGSVPGSISPTNSEIFQEGLRIAPTFLYREGK LNKELWRIFEDNTRIPDLIWGDIEAMVAGHLQLEQRVTELCNRLGLEKLNQGINDVLKLSEIRAREIIGAMTDGVYEFHD YLESYFPNEVIFVNIKMTVKGDELEIDYEGSDPQLPLAMNLVAGDAKAHPFLCHPLVNYIITAADDIPRTGAMLRSVTIK APKGTLCNAEFPAAGGNRMVSVSRFYDVLLGCMNQAVPGGLVSAGYGIAGIIVASSLDPKTGKRHVSTVEPFMGGGGGRC NGDGMDAVDVPRGALRSAPIETVEIEQPFVIRRFGVENDTQGAGKYRGGGAAVLTIENRGPSTMVTVRGLDRFEFQPWGF GGGKCGQSGSVILNPKTAAEKDIGKVTVLELVPGDILHMVTPTGGGFGDPLDRDVAMVLKDVQQEFVSAERARSDYGVVV EGGAVNLAATESLRLQMKKGLRDDTYAYGTKRVEIEKVWDSKARIALANAVSHVPATLRHKAKTDLAKKVEALGQPITAA LVNSVAA >Mature_647_residues MDPVFTEVMKHRFAAIADEASNTVYRTAFTTFVKQTQDYQIALAAIEGEFFAFPVQSGMMSNLCHNIRPVIDMFGIENLK PGDVIFTNDPFTGNGLVTHMMDIHLIRPIFYKDKLVCFSWSFIHASDVGGSVPGSISPTNSEIFQEGLRIAPTFLYREGK LNKELWRIFEDNTRIPDLIWGDIEAMVAGHLQLEQRVTELCNRLGLEKLNQGINDVLKLSEIRAREIIGAMTDGVYEFHD YLESYFPNEVIFVNIKMTVKGDELEIDYEGSDPQLPLAMNLVAGDAKAHPFLCHPLVNYIITAADDIPRTGAMLRSVTIK APKGTLCNAEFPAAGGNRMVSVSRFYDVLLGCMNQAVPGGLVSAGYGIAGIIVASSLDPKTGKRHVSTVEPFMGGGGGRC NGDGMDAVDVPRGALRSAPIETVEIEQPFVIRRFGVENDTQGAGKYRGGGAAVLTIENRGPSTMVTVRGLDRFEFQPWGF GGGKCGQSGSVILNPKTAAEKDIGKVTVLELVPGDILHMVTPTGGGFGDPLDRDVAMVLKDVQQEFVSAERARSDYGVVV EGGAVNLAATESLRLQMKKGLRDDTYAYGTKRVEIEKVWDSKARIALANAVSHVPATLRHKAKTDLAKKVEALGQPITAA LVNSVAA
Specific function: HyuA and hyuB convert D- and L-substituted hydantoins to corresponding N-carbamyl-amino acids [H]
COG id: COG0146
COG function: function code EQ; N-methylhydantoinase B/acetone carboxylase, alpha subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the oxoprolinase family [H]
Homologues:
Organism=Homo sapiens, GI48314820, Length=557, Percent_Identity=25.673249551167, Blast_Score=139, Evalue=1e-32, Organism=Caenorhabditis elegans, GI133901900, Length=570, Percent_Identity=27.5438596491228, Blast_Score=149, Evalue=3e-36, Organism=Caenorhabditis elegans, GI133901902, Length=544, Percent_Identity=27.3897058823529, Blast_Score=127, Evalue=2e-29, Organism=Saccharomyces cerevisiae, GI6322634, Length=562, Percent_Identity=26.8683274021352, Blast_Score=152, Evalue=2e-37, Organism=Drosophila melanogaster, GI45550492, Length=560, Percent_Identity=25.8928571428571, Blast_Score=129, Evalue=8e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003692 [H]
Pfam domain/function: PF02538 Hydantoinase_B [H]
EC number: 3.5.2.14
Molecular weight: Translated: 70306; Mature: 70306
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDPVFTEVMKHRFAAIADEASNTVYRTAFTTFVKQTQDYQIALAAIEGEFFAFPVQSGMM CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCEEEEECHHHHH SNLCHNIRPVIDMFGIENLKPGDVIFTNDPFTGNGLVTHMMDIHLIRPIFYKDKLVCFSW HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEE SFIHASDVGGSVPGSISPTNSEIFQEGLRIAPTFLYREGKLNKELWRIFEDNTRIPDLIW EEEEECCCCCCCCCCCCCCCHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCCHHH GDIEAMVAGHLQLEQRVTELCNRLGLEKLNQGINDVLKLSEIRAREIIGAMTDGVYEFHD CCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLESYFPNEVIFVNIKMTVKGDELEIDYEGSDPQLPLAMNLVAGDAKAHPFLCHPLVNYI HHHHHCCCCEEEEEEEEEEECCEEEEEECCCCCCCCEEEEEEECCCCCCCEEHHHHHHHH ITAADDIPRTGAMLRSVTIKAPKGTLCNAEFPAAGGNRMVSVSRFYDVLLGCMNQAVPGG HHCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCC LVSAGYGIAGIIVASSLDPKTGKRHVSTVEPFMGGGGGRCNGDGMDAVDVPRGALRSAPI HHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHCCCC ETVEIEQPFVIRRFGVENDTQGAGKYRGGGAAVLTIENRGPSTMVTVRGLDRFEFQPWGF CEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCC GGGKCGQSGSVILNPKTAAEKDIGKVTVLELVPGDILHMVTPTGGGFGDPLDRDVAMVLK CCCCCCCCCCEEECCCCCCHHCCCCEEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHH DVQQEFVSAERARSDYGVVVEGGAVNLAATESLRLQMKKGLRDDTYAYGTKRVEIEKVWD HHHHHHHHHHHCCCCCCEEEECCEEEEEEHHHHHHHHHHCCCCCHHHCCCEEEEEEECCC SKARIALANAVSHVPATLRHKAKTDLAKKVEALGQPITAALVNSVAA CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC >Mature Secondary Structure MDPVFTEVMKHRFAAIADEASNTVYRTAFTTFVKQTQDYQIALAAIEGEFFAFPVQSGMM CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCEEEEECHHHHH SNLCHNIRPVIDMFGIENLKPGDVIFTNDPFTGNGLVTHMMDIHLIRPIFYKDKLVCFSW HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEE SFIHASDVGGSVPGSISPTNSEIFQEGLRIAPTFLYREGKLNKELWRIFEDNTRIPDLIW EEEEECCCCCCCCCCCCCCCHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCCHHH GDIEAMVAGHLQLEQRVTELCNRLGLEKLNQGINDVLKLSEIRAREIIGAMTDGVYEFHD CCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLESYFPNEVIFVNIKMTVKGDELEIDYEGSDPQLPLAMNLVAGDAKAHPFLCHPLVNYI HHHHHCCCCEEEEEEEEEEECCEEEEEECCCCCCCCEEEEEEECCCCCCCEEHHHHHHHH ITAADDIPRTGAMLRSVTIKAPKGTLCNAEFPAAGGNRMVSVSRFYDVLLGCMNQAVPGG HHCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCC LVSAGYGIAGIIVASSLDPKTGKRHVSTVEPFMGGGGGRCNGDGMDAVDVPRGALRSAPI HHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHCCCC ETVEIEQPFVIRRFGVENDTQGAGKYRGGGAAVLTIENRGPSTMVTVRGLDRFEFQPWGF CEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCC GGGKCGQSGSVILNPKTAAEKDIGKVTVLELVPGDILHMVTPTGGGFGDPLDRDVAMVLK CCCCCCCCCCEEECCCCCCHHCCCCEEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHH DVQQEFVSAERARSDYGVVVEGGAVNLAATESLRLQMKKGLRDDTYAYGTKRVEIEKVWD HHHHHHHHHHHCCCCCCEEEECCEEEEEEHHHHHHHHHHCCCCCHHHCCCEEEEEEECCC SKARIALANAVSHVPATLRHKAKTDLAKKVEALGQPITAALVNSVAA CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; N-methylimidazolidine-2,4-dione; H2O
Specific reaction: ATP + N-methylimidazolidine-2,4-dione + 2 H2O = ADP + phosphate + N-carbamoylsarcosine
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1732229 [H]