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The map label for this gene is csgD [C]

Identifier: 110634798

GI number: 110634798

Start: 2632774

End: 2634438

Strand: Direct

Name: csgD [C]

Synonym: Meso_2457

Alternate gene names: 110634798

Gene position: 2632774-2634438 (Clockwise)

Preceding gene: 110634797

Following gene: 110634799

Centisome position: 59.67

GC content: 64.86

Gene sequence:

>1665_bases
ATGGAAAGCTCGGATTCGATGCCGCGTGGCAACCTCTATGGCAAACCGGATCACATCGCTCTGGGTCACCAGGCCTATGA
GCGAAAGGCCTGGTATGACGCTTACCGAAGGCTGTCGCGCGCGGGTGAGGCGGCGCCCCTCGACGTTGAAGACCTGGAGC
GGCTGGCCGTGTCGGCTTACCTGGTCGGACGCGACGAGGATTACCTACGGGTTTTGGAGCGGGTCCATCACGCCCATCTC
GACAGCGGCAATCTGATCCGTGCCGCGCGCGCAGCCTTCTGGGTGGGGCTGCGCCTGGCCCTGCGTGGCGAGGCCGGTCC
GGCGAGCGGGTGGTTCGGCCGTGCCCATCGGCTGCTCGAACGCGAAGGCAAGTCCTGCGTCGAGGAAGGGTATCTCTTGC
TGCCGCTCGCGGAGCAGCAACTCGGTGCCAAAGCCGCTGACACCGCCCTCGGCACGGCGACCCGCGCTGCCGAGATCGCG
GAGAAATTTGGGGAAGCCGATCTAGGAGCCTGCGCCCGTCATATGCAGGGCCGGATACTTATCCAGCAGGGTGAGGTGGA
AAAGGGGCTCGCTCTGCTGGACGAAGCGATGGTGGCGGTCACTGCCGGAGAACTGTCGCCGATTATGACGGGCCTGATCT
ATTGCAGCGTCATCGATGCCTGTCAGCAGATTTATGCCGTGGATCGTGCGCGCCAATGGACGAACGCCCTGGCGCAGTGG
TGCGCGGAGCAGCCGCAGCTTGTGAGCTTTACCGGCAGCTGCCTGGTTCATCGTGCCGAGATCATGCAGATGAACGGTTT
TTGGCCCCAGGCGATAGAGGAAGCTCGCCGCGCATGCGCCGTTACGCGGGGGTCGGAACTGCCGCCACCGGGAACTGCCT
ATTATCAGCAGGCGGAAATTCACCGCCTGCGCGGCGAATTCGCGGAGGCCGAGAAGGCGTTCCGGCAGGCCAGCAGTCGC
GGCTGTGAGCCGCTGCCCGGCCTTGCTTTGCTGCGGCTTGCCCAAAAGCGAACCGAAGCTGCGGCTGCGGCAATCAAGCG
GGCCCTTGGAGCGACGGAGGATCGGCTGCTGCGCGCCAAGTTTCTACCGGCCTGCGTGGAGATCATGCTTGCAAGCGGCG
ATATTGCCTCGGCCGGCGAGGCATGCCGGGAGTTGGAGGAAAGCGCCGATCGTTTCCGGACTGTTGTCCTGCAGGCGATG
GCCGGCCATGCGGCCGGTGCCGTCGCCTTGTCTGCCGATGATCACCAAAACGCGTTGAAAGCCCTCAGGGCCGCATTTGA
GCTTTGGCTCCAGGTCGAGGCGCCCTATCCTGCCGCGCGCACGCGGGAGCTCATGGCATTGGCGTGCCGCGGCATGGGCG
ACGAGGAGGGCGCGAGCCTGGAACTCGCTGCGGCCCGCGAAGCGTTCCAGGCGTTGGGCGCTGCGCCGGATATGGCCAGG
ATCGATCGCTTGGCGCTTCCGCGCAACACGCGCAAGGGACTGACCCGGCGCGAACTTGAGGTGCTGCGGTTGGTTACGGC
TGGCAAGCCGAACAAGGTGATCGCGGCCGAGTTGTTTCTAAGTGAGAAGACGATCGACCGGCATCTTAGCAACATCTTCG
ACAAGCTTGGTGTCTCCTCGCGAACGGCCGCTGCCGCCTGGGCGTTCCGCCAAGGGCTCGTTTGA

Upstream 100 bases:

>100_bases
CACTTCAATCCGAACGAGCGATAGGCTTCGAATAGCCACTGCGGCCTAGAGCCCGCGGCTTCATCTTGTTAATGTTCTGC
GTTCGCCGGAACAAACATGG

Downstream 100 bases:

>100_bases
GCCAGGGTCGAGCATGCGTGGGTGAAATCACCCATAAAGCGCTTTGCGACAAATTGGGGAATCTTGCCGAAGCGGCGCGT
AGACAACGGTCATAGGCTTT

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator LuxR Family; Response Regulator Receiver Protein; Transcriptional Regulator; TPR Repeat-Containing Protein; Regulatory Protein LuxRResponse Regulator Receiver; Transcriptional Regulator CadC

Number of amino acids: Translated: 554; Mature: 554

Protein sequence:

>554_residues
MESSDSMPRGNLYGKPDHIALGHQAYERKAWYDAYRRLSRAGEAAPLDVEDLERLAVSAYLVGRDEDYLRVLERVHHAHL
DSGNLIRAARAAFWVGLRLALRGEAGPASGWFGRAHRLLEREGKSCVEEGYLLLPLAEQQLGAKAADTALGTATRAAEIA
EKFGEADLGACARHMQGRILIQQGEVEKGLALLDEAMVAVTAGELSPIMTGLIYCSVIDACQQIYAVDRARQWTNALAQW
CAEQPQLVSFTGSCLVHRAEIMQMNGFWPQAIEEARRACAVTRGSELPPPGTAYYQQAEIHRLRGEFAEAEKAFRQASSR
GCEPLPGLALLRLAQKRTEAAAAAIKRALGATEDRLLRAKFLPACVEIMLASGDIASAGEACRELEESADRFRTVVLQAM
AGHAAGAVALSADDHQNALKALRAAFELWLQVEAPYPAARTRELMALACRGMGDEEGASLELAAAREAFQALGAAPDMAR
IDRLALPRNTRKGLTRRELEVLRLVTAGKPNKVIAAELFLSEKTIDRHLSNIFDKLGVSSRTAAAAWAFRQGLV

Sequences:

>Translated_554_residues
MESSDSMPRGNLYGKPDHIALGHQAYERKAWYDAYRRLSRAGEAAPLDVEDLERLAVSAYLVGRDEDYLRVLERVHHAHL
DSGNLIRAARAAFWVGLRLALRGEAGPASGWFGRAHRLLEREGKSCVEEGYLLLPLAEQQLGAKAADTALGTATRAAEIA
EKFGEADLGACARHMQGRILIQQGEVEKGLALLDEAMVAVTAGELSPIMTGLIYCSVIDACQQIYAVDRARQWTNALAQW
CAEQPQLVSFTGSCLVHRAEIMQMNGFWPQAIEEARRACAVTRGSELPPPGTAYYQQAEIHRLRGEFAEAEKAFRQASSR
GCEPLPGLALLRLAQKRTEAAAAAIKRALGATEDRLLRAKFLPACVEIMLASGDIASAGEACRELEESADRFRTVVLQAM
AGHAAGAVALSADDHQNALKALRAAFELWLQVEAPYPAARTRELMALACRGMGDEEGASLELAAAREAFQALGAAPDMAR
IDRLALPRNTRKGLTRRELEVLRLVTAGKPNKVIAAELFLSEKTIDRHLSNIFDKLGVSSRTAAAAWAFRQGLV
>Mature_554_residues
MESSDSMPRGNLYGKPDHIALGHQAYERKAWYDAYRRLSRAGEAAPLDVEDLERLAVSAYLVGRDEDYLRVLERVHHAHL
DSGNLIRAARAAFWVGLRLALRGEAGPASGWFGRAHRLLEREGKSCVEEGYLLLPLAEQQLGAKAADTALGTATRAAEIA
EKFGEADLGACARHMQGRILIQQGEVEKGLALLDEAMVAVTAGELSPIMTGLIYCSVIDACQQIYAVDRARQWTNALAQW
CAEQPQLVSFTGSCLVHRAEIMQMNGFWPQAIEEARRACAVTRGSELPPPGTAYYQQAEIHRLRGEFAEAEKAFRQASSR
GCEPLPGLALLRLAQKRTEAAAAAIKRALGATEDRLLRAKFLPACVEIMLASGDIASAGEACRELEESADRFRTVVLQAM
AGHAAGAVALSADDHQNALKALRAAFELWLQVEAPYPAARTRELMALACRGMGDEEGASLELAAAREAFQALGAAPDMAR
IDRLALPRNTRKGLTRRELEVLRLVTAGKPNKVIAAELFLSEKTIDRHLSNIFDKLGVSSRTAAAAWAFRQGLV

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60299; Mature: 60299

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESSDSMPRGNLYGKPDHIALGHQAYERKAWYDAYRRLSRAGEAAPLDVEDLERLAVSAY
CCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LVGRDEDYLRVLERVHHAHLDSGNLIRAARAAFWVGLRLALRGEAGPASGWFGRAHRLLE
HCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHH
REGKSCVEEGYLLLPLAEQQLGAKAADTALGTATRAAEIAEKFGEADLGACARHMQGRIL
HHHHHHHHCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEE
IQQGEVEKGLALLDEAMVAVTAGELSPIMTGLIYCSVIDACQQIYAVDRARQWTNALAQW
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CAEQPQLVSFTGSCLVHRAEIMQMNGFWPQAIEEARRACAVTRGSELPPPGTAYYQQAEI
HCCCCCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
HRLRGEFAEAEKAFRQASSRGCEPLPGLALLRLAQKRTEAAAAAIKRALGATEDRLLRAK
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
FLPACVEIMLASGDIASAGEACRELEESADRFRTVVLQAMAGHAAGAVALSADDHQNALK
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHH
ALRAAFELWLQVEAPYPAARTRELMALACRGMGDEEGASLELAAAREAFQALGAAPDMAR
HHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHH
IDRLALPRNTRKGLTRRELEVLRLVTAGKPNKVIAAELFLSEKTIDRHLSNIFDKLGVSS
HHHHHCCCCHHHCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCC
RTAAAAWAFRQGLV
HHHHHHHHHHHCCC
>Mature Secondary Structure
MESSDSMPRGNLYGKPDHIALGHQAYERKAWYDAYRRLSRAGEAAPLDVEDLERLAVSAY
CCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LVGRDEDYLRVLERVHHAHLDSGNLIRAARAAFWVGLRLALRGEAGPASGWFGRAHRLLE
HCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHH
REGKSCVEEGYLLLPLAEQQLGAKAADTALGTATRAAEIAEKFGEADLGACARHMQGRIL
HHHHHHHHCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEE
IQQGEVEKGLALLDEAMVAVTAGELSPIMTGLIYCSVIDACQQIYAVDRARQWTNALAQW
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CAEQPQLVSFTGSCLVHRAEIMQMNGFWPQAIEEARRACAVTRGSELPPPGTAYYQQAEI
HCCCCCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
HRLRGEFAEAEKAFRQASSRGCEPLPGLALLRLAQKRTEAAAAAIKRALGATEDRLLRAK
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
FLPACVEIMLASGDIASAGEACRELEESADRFRTVVLQAMAGHAAGAVALSADDHQNALK
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHH
ALRAAFELWLQVEAPYPAARTRELMALACRGMGDEEGASLELAAAREAFQALGAAPDMAR
HHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHH
IDRLALPRNTRKGLTRRELEVLRLVTAGKPNKVIAAELFLSEKTIDRHLSNIFDKLGVSS
HHHHHCCCCHHHCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCC
RTAAAAWAFRQGLV
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA