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The map label for this gene is cydA [H]

Identifier: 110634766

GI number: 110634766

Start: 2598521

End: 2599963

Strand: Direct

Name: cydA [H]

Synonym: Meso_2425

Alternate gene names: 110634766

Gene position: 2598521-2599963 (Clockwise)

Preceding gene: 110634765

Following gene: 110634767

Centisome position: 58.89

GC content: 60.43

Gene sequence:

>1443_bases
ATGGAGGCGGACGTGCTTGATGGAATAGACGCGCTCTTGCTGGCCCGCGTTCAGTTCGCCTTCACCGTTTCCTTCCACTT
CATCTTCCCGGCCTTCACAATCGGGCTGGCCAGTTACCTGGCCGTGCTTGAAGGGCTGTGGCTCTGGACGGGACGGACGG
TCTTCCTCGACCTGTTTCGCTACTGGGTCAAAATCTTCGCCCTGACATTCGCCATGGGCGTGGTCTCCGGCATTGTGCTC
TCATATCAGTTCGGGACCAATTGGTCCGCGTTCTCCGATCGCGCCGGGCCGATCGTGGGGCCGCTGATGGCATATGAGGT
TCTCACCGCGTTCTTTCTTGAGGCGGGGTTTCTCGGGATCATGCTTTTCGGCATGAACCGCGTGGGCAAGGGCCTTCACT
TCACCGCGACGCTCATGGTCGCCGTGGGAACCCTGCTTTCGTCCTTCTGGGTGCTCGCGGCGAACTCGTGGATGCACACG
CCCGTCGGCTACTCAATTAGCGAAGCCGGCCAGTTCGTCCCGGAAGACTGGTGGCAGATCGTTTTCAACCCTTCCTTTCC
CTACCGTCTCGTCCACACGGTCCTGGGTGCCTACCTCACCACGGCGCTCGTCGTGGGAGCGGTCGGCGCATGGCACCTGC
TTCGGGAAAGCACCAATGAACGTGCGCGCGTGATGTTTTCCATGGCCATGGGCATGCTCATAGTCGCAGCGCCGATACAA
GTTTTCGTGGGAGACTTGCACGGCCTCAACACACAGGAGCATCAGCCCGTCAAGGTTCTGGCACTCGAGGGACATTTTGA
AAGCCATCCGAACGGCGCGCCGCTCTACCTGTTTGGCATCCCGGATCAGGAAGCAGGTACTCTGCGCTATGCGCTCGGCA
TTCCAAAGCTCGGCTCGCTCATTCTGCACCACAGCTTCGATGCGCCAATAGAAGGCCTGGAAACGGTTCCGCGCGAGGAA
TGGCCGCCGGTGGCGATCGTCTTCTGGTCCTTCCGCATAATGGTCGGCTTAGGCCTGCTTATGCTGGCCTTGGGCGGGCT
GGCTCTATTCGCGCGGTGGCGGGGGAGACTTTACGACTGGCGCAATCTGCATCGCTTTGCTGTCGCGATGGGGCCGGCCG
GCTTCATTGCAGTGCTGGCTGGCTGGGTCACGACAGAGGTCGGGAGGCAGCCATTTACGGTTTACGGGATGCTGAGGACG
GCGGAATCGGTCTCACCGCTGGATGCACCCGCGGTAGCTTTCTCTCTTGTCGCCTTCATAGTCGTCTATTTCGCCGTATT
TTCCGTTGGCACATGGTACATATTCCGGCTGATGGCGCATCTGCCGGTAACTCCAGAACCAGGACTGGAACCGGGGGATG
CCCCGATCCGGACTGCGGGCATTACACCAGCTCCGGCCATTGACCCGGAGCGGACCATCGGCGCGACAAAGAAAGGGTGG
TGA

Upstream 100 bases:

>100_bases
CGGCATCGTCAATGTAGTTGGCTTGCGGCCGTAAGGCGCCTTCGGCTTCGACTCGCCCTTGTTGCCCTCTCCGGTGAGCC
CTAGTTTCGGTGCCAAAACG

Downstream 100 bases:

>100_bases
TGATGGACCTGCCCACGCTTTGGGCCTTTATTCTGGCCTTTGCAGTTTTCGCCTATGTGGTTCTCGACGGGTTCGACCTC
GGCATAGGCATCCTCTTCCC

Product: cytochrome bd ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MEADVLDGIDALLLARVQFAFTVSFHFIFPAFTIGLASYLAVLEGLWLWTGRTVFLDLFRYWVKIFALTFAMGVVSGIVL
SYQFGTNWSAFSDRAGPIVGPLMAYEVLTAFFLEAGFLGIMLFGMNRVGKGLHFTATLMVAVGTLLSSFWVLAANSWMHT
PVGYSISEAGQFVPEDWWQIVFNPSFPYRLVHTVLGAYLTTALVVGAVGAWHLLRESTNERARVMFSMAMGMLIVAAPIQ
VFVGDLHGLNTQEHQPVKVLALEGHFESHPNGAPLYLFGIPDQEAGTLRYALGIPKLGSLILHHSFDAPIEGLETVPREE
WPPVAIVFWSFRIMVGLGLLMLALGGLALFARWRGRLYDWRNLHRFAVAMGPAGFIAVLAGWVTTEVGRQPFTVYGMLRT
AESVSPLDAPAVAFSLVAFIVVYFAVFSVGTWYIFRLMAHLPVTPEPGLEPGDAPIRTAGITPAPAIDPERTIGATKKGW

Sequences:

>Translated_480_residues
MEADVLDGIDALLLARVQFAFTVSFHFIFPAFTIGLASYLAVLEGLWLWTGRTVFLDLFRYWVKIFALTFAMGVVSGIVL
SYQFGTNWSAFSDRAGPIVGPLMAYEVLTAFFLEAGFLGIMLFGMNRVGKGLHFTATLMVAVGTLLSSFWVLAANSWMHT
PVGYSISEAGQFVPEDWWQIVFNPSFPYRLVHTVLGAYLTTALVVGAVGAWHLLRESTNERARVMFSMAMGMLIVAAPIQ
VFVGDLHGLNTQEHQPVKVLALEGHFESHPNGAPLYLFGIPDQEAGTLRYALGIPKLGSLILHHSFDAPIEGLETVPREE
WPPVAIVFWSFRIMVGLGLLMLALGGLALFARWRGRLYDWRNLHRFAVAMGPAGFIAVLAGWVTTEVGRQPFTVYGMLRT
AESVSPLDAPAVAFSLVAFIVVYFAVFSVGTWYIFRLMAHLPVTPEPGLEPGDAPIRTAGITPAPAIDPERTIGATKKGW
>Mature_480_residues
MEADVLDGIDALLLARVQFAFTVSFHFIFPAFTIGLASYLAVLEGLWLWTGRTVFLDLFRYWVKIFALTFAMGVVSGIVL
SYQFGTNWSAFSDRAGPIVGPLMAYEVLTAFFLEAGFLGIMLFGMNRVGKGLHFTATLMVAVGTLLSSFWVLAANSWMHT
PVGYSISEAGQFVPEDWWQIVFNPSFPYRLVHTVLGAYLTTALVVGAVGAWHLLRESTNERARVMFSMAMGMLIVAAPIQ
VFVGDLHGLNTQEHQPVKVLALEGHFESHPNGAPLYLFGIPDQEAGTLRYALGIPKLGSLILHHSFDAPIEGLETVPREE
WPPVAIVFWSFRIMVGLGLLMLALGGLALFARWRGRLYDWRNLHRFAVAMGPAGFIAVLAGWVTTEVGRQPFTVYGMLRT
AESVSPLDAPAVAFSLVAFIVVYFAVFSVGTWYIFRLMAHLPVTPEPGLEPGDAPIRTAGITPAPAIDPERTIGATKKGW

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=524, Percent_Identity=30.9160305343511, Blast_Score=231, Evalue=5e-62,
Organism=Escherichia coli, GI1787212, Length=316, Percent_Identity=37.3417721518987, Blast_Score=223, Evalue=3e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 52719; Mature: 52719

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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>Mature Secondary Structure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PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]