Click here to switch to the map view.

The map label for this gene is cydB [H]

Identifier: 110634767

GI number: 110634767

Start: 2599966

End: 2600961

Strand: Direct

Name: cydB [H]

Synonym: Meso_2426

Alternate gene names: 110634767

Gene position: 2599966-2600961 (Clockwise)

Preceding gene: 110634766

Following gene: 110634772

Centisome position: 58.92

GC content: 61.24

Gene sequence:

>996_bases
ATGGACCTGCCCACGCTTTGGGCCTTTATTCTGGCCTTTGCAGTTTTCGCCTATGTGGTTCTCGACGGGTTCGACCTCGG
CATAGGCATCCTCTTCCCTACGCTCCAGCGGGGTCCCGAACGCGATCAGGCAATGAACTCGGTTGCCCCGATCTGGGACG
GCAACGAAACCTGGCTGGTGATGGGCGGTGGCGGCCTGCTCGCCGCATTTCCCCTCGCCTACGCAATCATCATGCCCGCC
GTCTATGCGCCAATCATCGCGATGCTGCTTGCATTGATCTTCCGAGGCGTCGCTTTCGAGTTTCGCTGGCGCGACCCGGG
CCATCAATGGTTCTGGGACCTTTCGTTCGCAAGCGGGTCCATTTTGTCCGCTTTCGCCCAGGGCGTCACTCTCGGCGCAT
TGCTGCAGGGGATCGTCGTGGAAGGCAGGCAATATGGGGGCGGCTGGTGGGACTGGCTGTCCCCGTTCAGTCTGCTGACC
GGCGTCAGCGTGGTTATAGGCTACGCGCTTTTGGGCTCGACCTGGCTGATTATGAAGACGGAAGGAGCGCTGCAGGAACA
CGCCTTCCGCTATGCCCGCATCACCGGAGCGGGGACTCTGGCCGCCATAGCCGCAGTCAGCCTCGCGACGCCATTCCTCG
AAGAGGCTTATTACGAGCGCTGGTTCGCCTGGCCGCATGTCCTATTTACCGCCCAGGTGCCCCTGCTCGTGGTCATCATC
GCGGGAGCGTTTGTCCTAAGCCTCCACCGTCGCAACGAGCGGCTGCCCTTTCTCCTCGCGCTGGCACTGTTTGCCGTCAG
CATGGCGGGGCTGGGCATCAGCATTTTCCCCGATATTGTACCCGGGGCTGTCCGTATCCATGATGCGGCGGCGCCAGAGT
CGAGCCTCATCTTCATGCTGATCGGAGCGGGTTTCCTCATCCCGATCATCATCGCCTACACCTCCTACTCCTACTGGATT
TTCCGCGGAAAGGTGGGGCACGAGGGATATCACTGA

Upstream 100 bases:

>100_bases
TGGAACCGGGGGATGCCCCGATCCGGACTGCGGGCATTACACCAGCTCCGGCCATTGACCCGGAGCGGACCATCGGCGCG
ACAAAGAAAGGGTGGTGATG

Downstream 100 bases:

>100_bases
TGGCCGATGCTCCCGGGCCGCTTTGGCAGCGGCTTCTTTGGTTCGTCGGCCTTTGGATAGCTGGCGTGGCGGTCGTTGCC
GCCATCGGCTACGGAATCCG

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MDLPTLWAFILAFAVFAYVVLDGFDLGIGILFPTLQRGPERDQAMNSVAPIWDGNETWLVMGGGGLLAAFPLAYAIIMPA
VYAPIIAMLLALIFRGVAFEFRWRDPGHQWFWDLSFASGSILSAFAQGVTLGALLQGIVVEGRQYGGGWWDWLSPFSLLT
GVSVVIGYALLGSTWLIMKTEGALQEHAFRYARITGAGTLAAIAAVSLATPFLEEAYYERWFAWPHVLFTAQVPLLVVII
AGAFVLSLHRRNERLPFLLALALFAVSMAGLGISIFPDIVPGAVRIHDAAAPESSLIFMLIGAGFLIPIIIAYTSYSYWI
FRGKVGHEGYH

Sequences:

>Translated_331_residues
MDLPTLWAFILAFAVFAYVVLDGFDLGIGILFPTLQRGPERDQAMNSVAPIWDGNETWLVMGGGGLLAAFPLAYAIIMPA
VYAPIIAMLLALIFRGVAFEFRWRDPGHQWFWDLSFASGSILSAFAQGVTLGALLQGIVVEGRQYGGGWWDWLSPFSLLT
GVSVVIGYALLGSTWLIMKTEGALQEHAFRYARITGAGTLAAIAAVSLATPFLEEAYYERWFAWPHVLFTAQVPLLVVII
AGAFVLSLHRRNERLPFLLALALFAVSMAGLGISIFPDIVPGAVRIHDAAAPESSLIFMLIGAGFLIPIIIAYTSYSYWI
FRGKVGHEGYH
>Mature_331_residues
MDLPTLWAFILAFAVFAYVVLDGFDLGIGILFPTLQRGPERDQAMNSVAPIWDGNETWLVMGGGGLLAAFPLAYAIIMPA
VYAPIIAMLLALIFRGVAFEFRWRDPGHQWFWDLSFASGSILSAFAQGVTLGALLQGIVVEGRQYGGGWWDWLSPFSLLT
GVSVVIGYALLGSTWLIMKTEGALQEHAFRYARITGAGTLAAIAAVSLATPFLEEAYYERWFAWPHVLFTAQVPLLVVII
AGAFVLSLHRRNERLPFLLALALFAVSMAGLGISIFPDIVPGAVRIHDAAAPESSLIFMLIGAGFLIPIIIAYTSYSYWI
FRGKVGHEGYH

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=360, Percent_Identity=28.6111111111111, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787213, Length=370, Percent_Identity=28.6486486486486, Blast_Score=118, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36176; Mature: 36176

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLPTLWAFILAFAVFAYVVLDGFDLGIGILFPTLQRGPERDQAMNSVAPIWDGNETWLV
CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEEEE
MGGGGLLAAFPLAYAIIMPAVYAPIIAMLLALIFRGVAFEFRWRDPGHQWFWDLSFASGS
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEECCCCH
ILSAFAQGVTLGALLQGIVVEGRQYGGGWWDWLSPFSLLTGVSVVIGYALLGSTWLIMKT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
EGALQEHAFRYARITGAGTLAAIAAVSLATPFLEEAYYERWFAWPHVLFTAQVPLLVVII
CCHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGAFVLSLHRRNERLPFLLALALFAVSMAGLGISIFPDIVPGAVRIHDAAAPESSLIFML
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEECHHHCCCCEEEECCCCCCCCEEHHH
IGAGFLIPIIIAYTSYSYWIFRGKVGHEGYH
HHHHHHHHHHHHHHCCEEEEEECCCCCCCCC
>Mature Secondary Structure
MDLPTLWAFILAFAVFAYVVLDGFDLGIGILFPTLQRGPERDQAMNSVAPIWDGNETWLV
CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEEEE
MGGGGLLAAFPLAYAIIMPAVYAPIIAMLLALIFRGVAFEFRWRDPGHQWFWDLSFASGS
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEECCCCH
ILSAFAQGVTLGALLQGIVVEGRQYGGGWWDWLSPFSLLTGVSVVIGYALLGSTWLIMKT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
EGALQEHAFRYARITGAGTLAAIAAVSLATPFLEEAYYERWFAWPHVLFTAQVPLLVVII
CCHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGAFVLSLHRRNERLPFLLALALFAVSMAGLGISIFPDIVPGAVRIHDAAAPESSLIFML
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEECHHHCCCCEEEECCCCCCCCEEHHH
IGAGFLIPIIIAYTSYSYWIFRGKVGHEGYH
HHHHHHHHHHHHHHCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]