| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
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The map label for this gene is citZ [H]
Identifier: 110634733
GI number: 110634733
Start: 2546753
End: 2547928
Strand: Direct
Name: citZ [H]
Synonym: Meso_2391
Alternate gene names: 110634733
Gene position: 2546753-2547928 (Clockwise)
Preceding gene: 110634728
Following gene: 110634752
Centisome position: 57.72
GC content: 63.69
Gene sequence:
>1176_bases GTGACACAACGCCTTGTAAGTTCCGAACGTGCCGCGGCCATTCTCGGCGTGAGCCGGCAAACCCTTTATGCTTATGTCAG CCGGGGTCAGATCAGAGCGGAAGTGGACCCGGCGGACCCGCGGCGTCAGCTTTACGACGCGCGAGAGTTGGAGGCGATCG CCGCGCGCAAGGCGTTGGGGCGCAAGCCGCGCGAGGCCGCGGCAAACGCACTTGATTGGGGACTGCCGGTGCTGAATTCG GCGCTCAGCCATATCAGCAACGACACGCTCTTCTATCGCGGTATCGATGCCATTGAATTCTCTCGCCACGCTACACTTGA GAGCACGGCTCGCCTTTTGTGGGGATGCGGGAGTACCGATCCGTTCGCCCTGCCATTCACGCATGCAATGCTTCAGCCGC CGCATGAGCTTTCGCTTGTCGCCAAGTGCCAATTTATTCTGGCGCTTCATGCCTCAGACCTTCCCACCATCTGGCGGCGC GATCAAAGAAATCTCTGGCCGAGTGCCGCCAGCATCGTCCGGATGCTGGAATGGGCCGGCGCGGGCTGTCCGATTGCAGA GCTACCGGTACATGAAGCGCTTGCCCGCCATTGGGACAGGGTGGAGGCCGCAGACCTGTTCCGCCGCGCTCTCGTTCTTG TCGCCGACCACGAACTCAATGCCTCGACCTTCGCGGCCCGTGTGGTGGCTTCCACGGGAGGCTCGCTGGCCGCCGCTGTG ACGGGCGGACTGGCCGCCCTGAGCGGTCCTCGCCACGGCGGGCAGATTCCGATGGTGGAAGCGCTCTTTGAGCAGGCCCG GCAGGCCGGGAACCTGCGCGCTTTCATCGATGCCAAGCTGCGCCTAGGTGAACGACTGCCGGGCTTCGGCCATCCGCTTT ACCTTGTTGCCGATCCTCGGGCCAACGAACTGCTGCACTGGCTCCCTGAAGACCGCTTCCGCATGGAGCTGAGCGATGTT GTCTTCGAGCTATCGGGGCATCGGCCCAACATAGATTTCGCGCTTGTTGGCCTGCGCCATACCTTGGGCTTGCCGCAGGA TACGGCGCTTTTCCTGTTCCTCCTGGGGCGCAGCGTCGGCTGGATCGCGCACGCGCTTGAGCAGCACAGTGACGGCCGGG TCATCCGGCCGCGCGCGAGCTATGTAGGCCAGCGAAGCGAGACCATACCCCGGTGA
Upstream 100 bases:
>100_bases AAGGTGTGGCCATTACTTTCTCCTGGCTGGTTACCTGTTCAAGAAATGGCCAGTTGATGATATCGTCAAGATTGATACAT ATAATCAACATGAGAAAGCA
Downstream 100 bases:
>100_bases GCGTCAAGCAGCGGCTATGATGCGGGACGCAGCCGCCGCCAGCCTGTCTTCCGCGGCGCTCAGCCTGGCGCGCTCTTCCT CCATCCATGAACGGGCGGCA
Product: citrate synthase
Products: NA
Alternate protein names: Citrate synthase II [H]
Number of amino acids: Translated: 391; Mature: 390
Protein sequence:
>391_residues MTQRLVSSERAAAILGVSRQTLYAYVSRGQIRAEVDPADPRRQLYDARELEAIAARKALGRKPREAAANALDWGLPVLNS ALSHISNDTLFYRGIDAIEFSRHATLESTARLLWGCGSTDPFALPFTHAMLQPPHELSLVAKCQFILALHASDLPTIWRR DQRNLWPSAASIVRMLEWAGAGCPIAELPVHEALARHWDRVEAADLFRRALVLVADHELNASTFAARVVASTGGSLAAAV TGGLAALSGPRHGGQIPMVEALFEQARQAGNLRAFIDAKLRLGERLPGFGHPLYLVADPRANELLHWLPEDRFRMELSDV VFELSGHRPNIDFALVGLRHTLGLPQDTALFLFLLGRSVGWIAHALEQHSDGRVIRPRASYVGQRSETIPR
Sequences:
>Translated_391_residues MTQRLVSSERAAAILGVSRQTLYAYVSRGQIRAEVDPADPRRQLYDARELEAIAARKALGRKPREAAANALDWGLPVLNS ALSHISNDTLFYRGIDAIEFSRHATLESTARLLWGCGSTDPFALPFTHAMLQPPHELSLVAKCQFILALHASDLPTIWRR DQRNLWPSAASIVRMLEWAGAGCPIAELPVHEALARHWDRVEAADLFRRALVLVADHELNASTFAARVVASTGGSLAAAV TGGLAALSGPRHGGQIPMVEALFEQARQAGNLRAFIDAKLRLGERLPGFGHPLYLVADPRANELLHWLPEDRFRMELSDV VFELSGHRPNIDFALVGLRHTLGLPQDTALFLFLLGRSVGWIAHALEQHSDGRVIRPRASYVGQRSETIPR >Mature_390_residues TQRLVSSERAAAILGVSRQTLYAYVSRGQIRAEVDPADPRRQLYDARELEAIAARKALGRKPREAAANALDWGLPVLNSA LSHISNDTLFYRGIDAIEFSRHATLESTARLLWGCGSTDPFALPFTHAMLQPPHELSLVAKCQFILALHASDLPTIWRRD QRNLWPSAASIVRMLEWAGAGCPIAELPVHEALARHWDRVEAADLFRRALVLVADHELNASTFAARVVASTGGSLAAAVT GGLAALSGPRHGGQIPMVEALFEQARQAGNLRAFIDAKLRLGERLPGFGHPLYLVADPRANELLHWLPEDRFRMELSDVV FELSGHRPNIDFALVGLRHTLGLPQDTALFLFLLGRSVGWIAHALEQHSDGRVIRPRASYVGQRSETIPR
Specific function: Might regulate the synthesis and function of enzymes involved in later enzymatic steps of Krebs cycle. Loss in activity results in sporulation defect [H]
COG id: COG0372
COG function: function code C; Citrate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the citrate synthase family [H]
Homologues:
Organism=Escherichia coli, GI1786527, Length=188, Percent_Identity=35.1063829787234, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1786939, Length=240, Percent_Identity=32.0833333333333, Blast_Score=100, Evalue=2e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011278 - InterPro: IPR016142 - InterPro: IPR016143 - InterPro: IPR002020 - InterPro: IPR016141 - InterPro: IPR019810 [H]
Pfam domain/function: PF00285 Citrate_synt [H]
EC number: =2.3.3.1 [H]
Molecular weight: Translated: 43079; Mature: 42948
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQRLVSSERAAAILGVSRQTLYAYVSRGQIRAEVDPADPRRQLYDARELEAIAARKALG CCCHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC RKPREAAANALDWGLPVLNSALSHISNDTLFYRGIDAIEFSRHATLESTARLLWGCGSTD CCCHHHHHHHHHCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHCHHHHHHHHHHCCCCCC PFALPFTHAMLQPPHELSLVAKCQFILALHASDLPTIWRRDQRNLWPSAASIVRMLEWAG CCCCCHHHHHHCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHCC AGCPIAELPVHEALARHWDRVEAADLFRRALVLVADHELNASTFAARVVASTGGSLAAAV CCCCHHHCCHHHHHHHHHCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCHHHH TGGLAALSGPRHGGQIPMVEALFEQARQAGNLRAFIDAKLRLGERLPGFGHPLYLVADPR HCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCCCCCCEEEEECCC ANELLHWLPEDRFRMELSDVVFELSGHRPNIDFALVGLRHTLGLPQDTALFLFLLGRSVG HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHH WIAHALEQHSDGRVIRPRASYVGQRSETIPR HHHHHHHHCCCCCEECCHHHHCCCCCCCCCC >Mature Secondary Structure TQRLVSSERAAAILGVSRQTLYAYVSRGQIRAEVDPADPRRQLYDARELEAIAARKALG CCHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC RKPREAAANALDWGLPVLNSALSHISNDTLFYRGIDAIEFSRHATLESTARLLWGCGSTD CCCHHHHHHHHHCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHCHHHHHHHHHHCCCCCC PFALPFTHAMLQPPHELSLVAKCQFILALHASDLPTIWRRDQRNLWPSAASIVRMLEWAG CCCCCHHHHHHCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHCC AGCPIAELPVHEALARHWDRVEAADLFRRALVLVADHELNASTFAARVVASTGGSLAAAV CCCCHHHCCHHHHHHHHHCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCHHHH TGGLAALSGPRHGGQIPMVEALFEQARQAGNLRAFIDAKLRLGERLPGFGHPLYLVADPR HCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCCCCCCEEEEECCC ANELLHWLPEDRFRMELSDVVFELSGHRPNIDFALVGLRHTLGLPQDTALFLFLLGRSVG HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHH WIAHALEQHSDGRVIRPRASYVGQRSETIPR HHHHHHHHCCCCCEECCHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8045898; 9387221; 9384377 [H]