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The map label for this gene is araC [C]

Identifier: 110634398

GI number: 110634398

Start: 2200259

End: 2201161

Strand: Reverse

Name: araC [C]

Synonym: Meso_2048

Alternate gene names: 110634398

Gene position: 2201161-2200259 (Counterclockwise)

Preceding gene: 110634403

Following gene: 110634391

Centisome position: 49.89

GC content: 62.02

Gene sequence:

>903_bases
ATGGCTGGGAAGAACGTCCCCAATTACCGTCTTTATCGCGAAAAATCAGGCGAATCGGAAGGATTCTGGCTGCACAGCGA
GACATTGTCTTTTCGCAGCAGCGTGCACAATTGGGAGATTTCACTGCATCGGCACCAGGCTCTCTTCCAGATCTTCGTGC
TGGAGGCCGGTGAAGGGGAACTCCTGGACGGAAAGGAACTGCGTTTCTTCAAGGCGCCGGCTGCGATCTACATCGCGCCG
GGCGCAACGCATGGTTTCCGCTATTATACGCGAGACGCGGATGGTCTCGTGATCACGGTGCTGGCCGACCGCCTGTCGCC
CGTTCGGGCCGCGGACTCGGCCATTTCCGCCTTTCTTTCAAAAACCCAGATCACGCCGCTCGAAGGGTTCGGACTGGATG
GATCGCATGTCGCACCCCTTGCCGCGCGTATCCATGAAGAGCTGCATCACGCCGGGCCGGGCAGCGACATTCTGCTCGAT
GCGATGGTGACTGAGCTTATCCTGCGGCTCGCGCGGACAGGAGCGCAGGCGGAGCCCACTGAGGAGCCCTTCGCGGCGAA
GGCACGTGACCGCCAGCGCATGCACGCCCTTTCCGCCTTGCTTGCCGCGCATTGCCGGGAGCACCGGCCTGTGAGCTTTT
ATGCCGAGAAGCTGGGGCTTTCGCCCGCGCATCTCAACCGTATCACGCGGCGTGAGGCTGGAGCGAGCGTGCTGGAGCTT
GCCGCCCGTCATCTCTTGAGAGCCGCGCGGCGGGAACTCGTCTTCACGCCGACGCCGGTTCAGGCGGTGGCCTATTCGTT
AGGCTTTCAGGATCCGGCCTATTTCAACCGCTTCTTCAAGCGCGAGACAGGCATGACTCCAGGCGCCTTCCGCGAGGCCG
AGCGGAAGAAGCTCGTCGCTTGA

Upstream 100 bases:

>100_bases
GCTTGCATGTTGTGCGGCGGACATTGGAACCAGGCAACACCTGCAGCAATGGACTTTCTTCGCCATTTATTGCACTTTCC
GATCATGAAATGAGGATGAA

Downstream 100 bases:

>100_bases
TGCGCCATTGCGGCGGGGACGTTCAGGCATGGATCCTCGGGTCAAGCCCGAGGATGACGATGGCATAGGACGTCTGCTAA
ACGCGGACGCCGGAGACCTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator PobR; Transcriptional Regulator; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Regulator Of 4HPA-Hydroxylase Operon; PobR Regulator; AraC-Family Transcriptional Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator Pobr Arac Family Protein; AraC Family Regulatory Protein; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; Helix-Turn-Helix AraC Type; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MAGKNVPNYRLYREKSGESEGFWLHSETLSFRSSVHNWEISLHRHQALFQIFVLEAGEGELLDGKELRFFKAPAAIYIAP
GATHGFRYYTRDADGLVITVLADRLSPVRAADSAISAFLSKTQITPLEGFGLDGSHVAPLAARIHEELHHAGPGSDILLD
AMVTELILRLARTGAQAEPTEEPFAAKARDRQRMHALSALLAAHCREHRPVSFYAEKLGLSPAHLNRITRREAGASVLEL
AARHLLRAARRELVFTPTPVQAVAYSLGFQDPAYFNRFFKRETGMTPGAFREAERKKLVA

Sequences:

>Translated_300_residues
MAGKNVPNYRLYREKSGESEGFWLHSETLSFRSSVHNWEISLHRHQALFQIFVLEAGEGELLDGKELRFFKAPAAIYIAP
GATHGFRYYTRDADGLVITVLADRLSPVRAADSAISAFLSKTQITPLEGFGLDGSHVAPLAARIHEELHHAGPGSDILLD
AMVTELILRLARTGAQAEPTEEPFAAKARDRQRMHALSALLAAHCREHRPVSFYAEKLGLSPAHLNRITRREAGASVLEL
AARHLLRAARRELVFTPTPVQAVAYSLGFQDPAYFNRFFKRETGMTPGAFREAERKKLVA
>Mature_299_residues
AGKNVPNYRLYREKSGESEGFWLHSETLSFRSSVHNWEISLHRHQALFQIFVLEAGEGELLDGKELRFFKAPAAIYIAPG
ATHGFRYYTRDADGLVITVLADRLSPVRAADSAISAFLSKTQITPLEGFGLDGSHVAPLAARIHEELHHAGPGSDILLDA
MVTELILRLARTGAQAEPTEEPFAAKARDRQRMHALSALLAAHCREHRPVSFYAEKLGLSPAHLNRITRREAGASVLELA
ARHLLRAARRELVFTPTPVQAVAYSLGFQDPAYFNRFFKRETGMTPGAFREAERKKLVA

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33348; Mature: 33217

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS01124 HTH_ARAC_FAMILY_2 ; PS00732 RIBOSOMAL_S16

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGKNVPNYRLYREKSGESEGFWLHSETLSFRSSVHNWEISLHRHQALFQIFVLEAGEGE
CCCCCCCCCEEEECCCCCCCCEEEEHHHHHHHHHCCCEEEEHHHHHHHHHEEEEECCCCC
LLDGKELRFFKAPAAIYIAPGATHGFRYYTRDADGLVITVLADRLSPVRAADSAISAFLS
CCCCCCEEEEECCEEEEECCCCCCCCEEEECCCCCEEEEEEHHHCCHHHHHHHHHHHHHH
KTQITPLEGFGLDGSHVAPLAARIHEELHHAGPGSDILLDAMVTELILRLARTGAQAEPT
HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
EEPFAAKARDRQRMHALSALLAAHCREHRPVSFYAEKLGLSPAHLNRITRREAGASVLEL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCHHHHHH
AARHLLRAARRELVFTPTPVQAVAYSLGFQDPAYFNRFFKRETGMTPGAFREAERKKLVA
HHHHHHHHHHHCEECCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
AGKNVPNYRLYREKSGESEGFWLHSETLSFRSSVHNWEISLHRHQALFQIFVLEAGEGE
CCCCCCCCEEEECCCCCCCCEEEEHHHHHHHHHCCCEEEEHHHHHHHHHEEEEECCCCC
LLDGKELRFFKAPAAIYIAPGATHGFRYYTRDADGLVITVLADRLSPVRAADSAISAFLS
CCCCCCEEEEECCEEEEECCCCCCCCEEEECCCCCEEEEEEHHHCCHHHHHHHHHHHHHH
KTQITPLEGFGLDGSHVAPLAARIHEELHHAGPGSDILLDAMVTELILRLARTGAQAEPT
HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
EEPFAAKARDRQRMHALSALLAAHCREHRPVSFYAEKLGLSPAHLNRITRREAGASVLEL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCHHHHHH
AARHLLRAARRELVFTPTPVQAVAYSLGFQDPAYFNRFFKRETGMTPGAFREAERKKLVA
HHHHHHHHHHHCEECCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA