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The map label for this gene is ddpC [H]

Identifier: 110634302

GI number: 110634302

Start: 2093330

End: 2094283

Strand: Direct

Name: ddpC [H]

Synonym: Meso_1952

Alternate gene names: 110634302

Gene position: 2093330-2094283 (Clockwise)

Preceding gene: 110634301

Following gene: 110634303

Centisome position: 47.44

GC content: 65.93

Gene sequence:

>954_bases
ATGTATCTGACCCAACCCATTCCTGCATCGCCGGCCTCGACCGGCGCGCGCATCAAGGCCTATTTCGCCCAGACACGGCT
CAGCCTTCTGGTTCGTTCGCCAATCGCGCTGATTTCGGCGCTAGTGCTGATTGCCCTGGTGCTGATCGCGCTGATCGGCG
CCCCGCTGGCGTTGGAAACGGCGAACTTCCAGAGCCTGCGCCTGCGCTTCTTCCCCCCGTTCAGCCTCGAGCACGGCTGG
ATTTACGTATTAGGCGCCGACGGGCTGGGCCGCAGCATGCTGGCGCAATTGATCGTCGGCGCGCGCACCAGCTTCATCGT
CGCCGGCGCCGCGGTCGGCCTGGCGGCCGTGGTGGGCACCAGTATCGGCATGATCAGCGGCTTTGTTGGCGGCTGGGTCG
ATGCGGCGCTGATGCGCGTCAGCGACATCATCGTTACCGTGCCCTCCCTGCTTCTGGCCCTCGCGGTGCTGTTCGTGCTC
GAACCCAGCATCTTCAATCTCGTGGCCGTGCTGGCGGTGTCGCGCCTGCCGATCTATTTGCGGGTGGCCCGCGCCCAGAC
CCTCGAACTGCGCGAGCGGGTATTCGTCGAGGCTTCGCGGGCCATCGGCGCCACCAACCTGCGCATCATCTGGCGCGATA
TCCGCCCGCTGGTGCTGCCTACGGTAATGACCGTTTCCATGCTCGAACTGGCCAGCGTCATGCTGGCGGCGGCGGGCCTG
AGCTTTCTAGGCGTCGGATTGCAGCGACCCGATGTCGATTGGGGCACCATCGTTTCGGAGGGTCGCGAATACCTGACCCG
GGCCTGGTGGGCCACGGTATTCCCCGGCATGGCAATTGTGATCACTGCGCTGGCCGCCAATTTCCTGTCGAACTGGCTGC
GCGCCAGCGGCGATCCCCTACAGGCCGGCGCGCTCGCCGCCGCTACCGCCCGCCAGGAGGACGCCCTGAAATGA

Upstream 100 bases:

>100_bases
CAGGCCGGGGTCTTCGTCGTCGGCATTGCCGTCATCCTGCTAAATTTCCTCGTGGACCTGATCTACGCGGCGGCCGACCC
AAGGATCCGGATTTCCTGAC

Downstream 100 bases:

>100_bases
CTGCCGCCGCCAAAATCATGCAGCAGCCCGGCGAGGCACTGATTGAAATCCACGACCTGACGGTGCAGTTCCGCACCGCC
GGCCGCGCCATCAACGCCGT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MYLTQPIPASPASTGARIKAYFAQTRLSLLVRSPIALISALVLIALVLIALIGAPLALETANFQSLRLRFFPPFSLEHGW
IYVLGADGLGRSMLAQLIVGARTSFIVAGAAVGLAAVVGTSIGMISGFVGGWVDAALMRVSDIIVTVPSLLLALAVLFVL
EPSIFNLVAVLAVSRLPIYLRVARAQTLELRERVFVEASRAIGATNLRIIWRDIRPLVLPTVMTVSMLELASVMLAAAGL
SFLGVGLQRPDVDWGTIVSEGREYLTRAWWATVFPGMAIVITALAANFLSNWLRASGDPLQAGALAAATARQEDALK

Sequences:

>Translated_317_residues
MYLTQPIPASPASTGARIKAYFAQTRLSLLVRSPIALISALVLIALVLIALIGAPLALETANFQSLRLRFFPPFSLEHGW
IYVLGADGLGRSMLAQLIVGARTSFIVAGAAVGLAAVVGTSIGMISGFVGGWVDAALMRVSDIIVTVPSLLLALAVLFVL
EPSIFNLVAVLAVSRLPIYLRVARAQTLELRERVFVEASRAIGATNLRIIWRDIRPLVLPTVMTVSMLELASVMLAAAGL
SFLGVGLQRPDVDWGTIVSEGREYLTRAWWATVFPGMAIVITALAANFLSNWLRASGDPLQAGALAAATARQEDALK
>Mature_317_residues
MYLTQPIPASPASTGARIKAYFAQTRLSLLVRSPIALISALVLIALVLIALIGAPLALETANFQSLRLRFFPPFSLEHGW
IYVLGADGLGRSMLAQLIVGARTSFIVAGAAVGLAAVVGTSIGMISGFVGGWVDAALMRVSDIIVTVPSLLLALAVLFVL
EPSIFNLVAVLAVSRLPIYLRVARAQTLELRERVFVEASRAIGATNLRIIWRDIRPLVLPTVMTVSMLELASVMLAAAGL
SFLGVGLQRPDVDWGTIVSEGREYLTRAWWATVFPGMAIVITALAANFLSNWLRASGDPLQAGALAAATARQEDALK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=287, Percent_Identity=34.8432055749129, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1787054, Length=275, Percent_Identity=34.5454545454545, Blast_Score=157, Evalue=9e-40,
Organism=Escherichia coli, GI1789964, Length=229, Percent_Identity=39.7379912663755, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1789889, Length=218, Percent_Identity=33.4862385321101, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1787498, Length=260, Percent_Identity=35.3846153846154, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787549, Length=253, Percent_Identity=30.8300395256917, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788505, Length=233, Percent_Identity=27.0386266094421, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33744; Mature: 33744

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLTQPIPASPASTGARIKAYFAQTRLSLLVRSPIALISALVLIALVLIALIGAPLALET
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
ANFQSLRLRFFPPFSLEHGWIYVLGADGLGRSMLAQLIVGARTSFIVAGAAVGLAAVVGT
CCHHHEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
SIGMISGFVGGWVDAALMRVSDIIVTVPSLLLALAVLFVLEPSIFNLVAVLAVSRLPIYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHE
RVARAQTLELRERVFVEASRAIGATNLRIIWRDIRPLVLPTVMTVSMLELASVMLAAAGL
EHHHHHHHHHHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFLGVGLQRPDVDWGTIVSEGREYLTRAWWATVFPGMAIVITALAANFLSNWLRASGDPL
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCC
QAGALAAATARQEDALK
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MYLTQPIPASPASTGARIKAYFAQTRLSLLVRSPIALISALVLIALVLIALIGAPLALET
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
ANFQSLRLRFFPPFSLEHGWIYVLGADGLGRSMLAQLIVGARTSFIVAGAAVGLAAVVGT
CCHHHEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
SIGMISGFVGGWVDAALMRVSDIIVTVPSLLLALAVLFVLEPSIFNLVAVLAVSRLPIYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHE
RVARAQTLELRERVFVEASRAIGATNLRIIWRDIRPLVLPTVMTVSMLELASVMLAAAGL
EHHHHHHHHHHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFLGVGLQRPDVDWGTIVSEGREYLTRAWWATVFPGMAIVITALAANFLSNWLRASGDPL
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCC
QAGALAAATARQEDALK
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]