| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
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The map label for this gene is dppD [H]
Identifier: 110634303
GI number: 110634303
Start: 2094280
End: 2095290
Strand: Direct
Name: dppD [H]
Synonym: Meso_1953
Alternate gene names: 110634303
Gene position: 2094280-2095290 (Clockwise)
Preceding gene: 110634302
Following gene: 110634304
Centisome position: 47.46
GC content: 66.07
Gene sequence:
>1011_bases ATGACTGCCGCCGCCAAAATCATGCAGCAGCCCGGCGAGGCACTGATTGAAATCCACGACCTGACGGTGCAGTTCCGCAC CGCCGGCCGCGCCATCAACGCCGTCCGCGGCATCGACCTCAGCATCGGGCCGGGCGAAAGCGTCGCCATCCTCGGCGAAT CCGGCTCGGGCAAGAGCGTCACAGGCAAGGCCGTAATGGGGCTGATCAACGCGCCCGGCAAGGTGAGCGGCTCGGTGCGC TTCGCCGGGCGAGAACTGGTTGGCCTGAGCGAAACCGAGTTGCAGGACGTGCGCGGTCCCGGGTTGGCGATGGTGTTCCA GGATTCTCTTGATGCGCTCAACCCGGTATTCTCGGTGGGCGAGCAGATCATGGAAATCCTGATGGTCCGGCTCGGCTGGT CGCGGGAGAAATCGCGGGCCGAGGCCATTTCGCTGATGCAGCAGGTGGGCATCGACAGCGCCGAAAAGCGGCTCAGCAGC TATCCGCATCAGTTCTCCGGCGGCATGCGTCAGCGCATCTGCATTGCCATGGCCATCGCACTCAAGCCGCAACTGCTGAT CGCCGACGAGCCGACCACCGCCCTCGATGTCACCGTGCAGGCCGGCATCCTCAAGCTGATTGCCAAGCTGCAGCGCGAGA GCGGCATGGCGCTGCTGTTCGTCACCCATGACCTGGCGGTGGCGCGGCAGGTGGCAAGCTATCTGGTGGTGATGTATGCC GGGCGCATCGTCGAGCGCGGCCCGATTGACGCGCTCTATGCCCGGCCGGCCCATCCCTATACCCGGGCGCTGCTCAACTC CAATCCGGGCAGCGTGAGCCACTGGTCACAGTTACACCCCATCTCTGGTAATCCGCCCGACAAGACCATGGTTTTCACCG GCTGCGCCTTTGCCGACCGCTGCCCGCGCGCCGTGTCGCGCTGCCGCGCCGAAGCGCCGGCGCTGCGCCAGGTTGCCCCC GGCCGCGACAGCCGCTGCCATTTCGCCGAGGAGTTGCTCGATGCGCACTGA
Upstream 100 bases:
>100_bases TGGCCGCCAATTTCCTGTCGAACTGGCTGCGCGCCAGCGGCGATCCCCTACAGGCCGGCGCGCTCGCCGCCGCTACCGCC CGCCAGGAGGACGCCCTGAA
Downstream 100 bases:
>100_bases CGGGCACACCACGCCACTGCTGCAGGTCAGCGGGCTGACCAAGCATTTCGGCAAATATACTGCGCTCGACAATGTCGACT TCGATCTGGCCGAAGGCGAG
Product: oligopeptide/dipeptide ABC transporter, ATPase subunit
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 336; Mature: 335
Protein sequence:
>336_residues MTAAAKIMQQPGEALIEIHDLTVQFRTAGRAINAVRGIDLSIGPGESVAILGESGSGKSVTGKAVMGLINAPGKVSGSVR FAGRELVGLSETELQDVRGPGLAMVFQDSLDALNPVFSVGEQIMEILMVRLGWSREKSRAEAISLMQQVGIDSAEKRLSS YPHQFSGGMRQRICIAMAIALKPQLLIADEPTTALDVTVQAGILKLIAKLQRESGMALLFVTHDLAVARQVASYLVVMYA GRIVERGPIDALYARPAHPYTRALLNSNPGSVSHWSQLHPISGNPPDKTMVFTGCAFADRCPRAVSRCRAEAPALRQVAP GRDSRCHFAEELLDAH
Sequences:
>Translated_336_residues MTAAAKIMQQPGEALIEIHDLTVQFRTAGRAINAVRGIDLSIGPGESVAILGESGSGKSVTGKAVMGLINAPGKVSGSVR FAGRELVGLSETELQDVRGPGLAMVFQDSLDALNPVFSVGEQIMEILMVRLGWSREKSRAEAISLMQQVGIDSAEKRLSS YPHQFSGGMRQRICIAMAIALKPQLLIADEPTTALDVTVQAGILKLIAKLQRESGMALLFVTHDLAVARQVASYLVVMYA GRIVERGPIDALYARPAHPYTRALLNSNPGSVSHWSQLHPISGNPPDKTMVFTGCAFADRCPRAVSRCRAEAPALRQVAP GRDSRCHFAEELLDAH >Mature_335_residues TAAAKIMQQPGEALIEIHDLTVQFRTAGRAINAVRGIDLSIGPGESVAILGESGSGKSVTGKAVMGLINAPGKVSGSVRF AGRELVGLSETELQDVRGPGLAMVFQDSLDALNPVFSVGEQIMEILMVRLGWSREKSRAEAISLMQQVGIDSAEKRLSSY PHQFSGGMRQRICIAMAIALKPQLLIADEPTTALDVTVQAGILKLIAKLQRESGMALLFVTHDLAVARQVASYLVVMYAG RIVERGPIDALYARPAHPYTRALLNSNPGSVSHWSQLHPISGNPPDKTMVFTGCAFADRCPRAVSRCRAEAPALRQVAPG RDSRCHFAEELLDAH
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI148612844, Length=228, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI255708477, Length=228, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI21536376, Length=229, Percent_Identity=26.2008733624454, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI105990541, Length=230, Percent_Identity=25.6521739130435, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI150417984, Length=222, Percent_Identity=27.9279279279279, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI156105685, Length=235, Percent_Identity=27.6595744680851, Blast_Score=65, Evalue=8e-11, Organism=Homo sapiens, GI9961252, Length=235, Percent_Identity=27.2340425531915, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI1789963, Length=316, Percent_Identity=47.7848101265823, Blast_Score=294, Evalue=7e-81, Organism=Escherichia coli, GI48994883, Length=333, Percent_Identity=44.4444444444444, Blast_Score=293, Evalue=8e-81, Organism=Escherichia coli, GI1788506, Length=259, Percent_Identity=46.3320463320463, Blast_Score=238, Evalue=3e-64, Organism=Escherichia coli, GI145693107, Length=262, Percent_Identity=46.1832061068702, Blast_Score=232, Evalue=3e-62, Organism=Escherichia coli, GI1787759, Length=321, Percent_Identity=39.5638629283489, Blast_Score=222, Evalue=3e-59, Organism=Escherichia coli, GI1787500, Length=316, Percent_Identity=38.2911392405063, Blast_Score=216, Evalue=2e-57, Organism=Escherichia coli, GI1789962, Length=323, Percent_Identity=35.2941176470588, Blast_Score=202, Evalue=3e-53, Organism=Escherichia coli, GI1787548, Length=307, Percent_Identity=33.8762214983713, Blast_Score=190, Evalue=9e-50, Organism=Escherichia coli, GI1787758, Length=326, Percent_Identity=35.8895705521472, Blast_Score=178, Evalue=5e-46, Organism=Escherichia coli, GI48994997, Length=260, Percent_Identity=35.7692307692308, Blast_Score=138, Evalue=7e-34, Organism=Escherichia coli, GI1789891, Length=211, Percent_Identity=36.9668246445498, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI1789890, Length=234, Percent_Identity=34.6153846153846, Blast_Score=135, Evalue=4e-33, Organism=Escherichia coli, GI1788225, Length=255, Percent_Identity=34.9019607843137, Blast_Score=131, Evalue=6e-32, Organism=Escherichia coli, GI1787547, Length=265, Percent_Identity=28.6792452830189, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI1789032, Length=276, Percent_Identity=31.1594202898551, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1788450, Length=235, Percent_Identity=32.7659574468085, Blast_Score=120, Evalue=2e-28, Organism=Escherichia coli, GI1786398, Length=286, Percent_Identity=28.3216783216783, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1786703, Length=218, Percent_Identity=34.8623853211009, Blast_Score=114, Evalue=1e-26, Organism=Escherichia coli, GI87081834, Length=231, Percent_Identity=33.3333333333333, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1789672, Length=273, Percent_Identity=30.4029304029304, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1787089, Length=239, Percent_Identity=34.3096234309623, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1787029, Length=237, Percent_Identity=32.9113924050633, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1788644, Length=164, Percent_Identity=35.3658536585366, Blast_Score=106, Evalue=3e-24, Organism=Escherichia coli, GI1787105, Length=286, Percent_Identity=32.5174825174825, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1787712, Length=249, Percent_Identity=31.3253012048193, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1786563, Length=227, Percent_Identity=33.920704845815, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1786872, Length=214, Percent_Identity=33.6448598130841, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1788761, Length=247, Percent_Identity=34.0080971659919, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI87081709, Length=262, Percent_Identity=29.7709923664122, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1787370, Length=225, Percent_Identity=30.6666666666667, Blast_Score=95, Evalue=8e-21, Organism=Escherichia coli, GI87081791, Length=255, Percent_Identity=29.0196078431373, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1789873, Length=210, Percent_Identity=30.4761904761905, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1790467, Length=251, Percent_Identity=28.2868525896414, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1790162, Length=246, Percent_Identity=25.609756097561, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786319, Length=225, Percent_Identity=29.7777777777778, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1786345, Length=233, Percent_Identity=28.3261802575107, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786803, Length=220, Percent_Identity=30, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786253, Length=224, Percent_Identity=31.6964285714286, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI87082267, Length=235, Percent_Identity=28.936170212766, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787112, Length=246, Percent_Identity=30.8943089430894, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI48995001, Length=240, Percent_Identity=29.1666666666667, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1789991, Length=238, Percent_Identity=26.890756302521, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787164, Length=209, Percent_Identity=33.4928229665072, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1789586, Length=259, Percent_Identity=29.3436293436293, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788165, Length=215, Percent_Identity=26.046511627907, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790544, Length=226, Percent_Identity=26.1061946902655, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787972, Length=250, Percent_Identity=29.2, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1787143, Length=259, Percent_Identity=29.7297297297297, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1790525, Length=224, Percent_Identity=26.3392857142857, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1790739, Length=281, Percent_Identity=28.4697508896797, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1789593, Length=216, Percent_Identity=26.3888888888889, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787792, Length=224, Percent_Identity=28.125, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1790534, Length=197, Percent_Identity=28.9340101522843, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193209708, Length=246, Percent_Identity=30.0813008130081, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17569143, Length=231, Percent_Identity=28.1385281385281, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71992285, Length=254, Percent_Identity=27.1653543307087, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71983510, Length=247, Percent_Identity=26.7206477732794, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI71983516, Length=247, Percent_Identity=26.7206477732794, Blast_Score=71, Evalue=9e-13, Organism=Caenorhabditis elegans, GI71983523, Length=247, Percent_Identity=26.7206477732794, Blast_Score=71, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17569145, Length=239, Percent_Identity=28.8702928870293, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71996550, Length=280, Percent_Identity=26.7857142857143, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI115533608, Length=232, Percent_Identity=26.7241379310345, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI71984940, Length=256, Percent_Identity=29.6875, Blast_Score=68, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6324985, Length=281, Percent_Identity=26.6903914590747, Blast_Score=87, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6324498, Length=234, Percent_Identity=27.3504273504274, Blast_Score=70, Evalue=7e-13, Organism=Saccharomyces cerevisiae, GI6319856, Length=196, Percent_Identity=26.0204081632653, Blast_Score=69, Evalue=8e-13, Organism=Drosophila melanogaster, GI221500365, Length=224, Percent_Identity=29.0178571428571, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI116007184, Length=224, Percent_Identity=29.0178571428571, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24641565, Length=226, Percent_Identity=30.0884955752212, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI19920532, Length=219, Percent_Identity=26.4840182648402, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24580930, Length=219, Percent_Identity=26.4840182648402, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28574533, Length=214, Percent_Identity=28.9719626168224, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI281363262, Length=228, Percent_Identity=31.140350877193, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI24653245, Length=228, Percent_Identity=31.140350877193, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36057; Mature: 35926
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAAAKIMQQPGEALIEIHDLTVQFRTAGRAINAVRGIDLSIGPGESVAILGESGSGKSV CCHHHHHHHCCCHHHEEEEHHEEEEEHHCCHHHHHHCCEEEECCCCEEEEEECCCCCCCE TGKAVMGLINAPGKVSGSVRFAGRELVGLSETELQDVRGPGLAMVFQDSLDALNPVFSVG EHHHHHHHHCCCCCCCCEEEECCCHHCCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHH EQIMEILMVRLGWSREKSRAEAISLMQQVGIDSAEKRLSSYPHQFSGGMRQRICIAMAIA HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHH LKPQLLIADEPTTALDVTVQAGILKLIAKLQRESGMALLFVTHDLAVARQVASYLVVMYA HCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHH GRIVERGPIDALYARPAHPYTRALLNSNPGSVSHWSQLHPISGNPPDKTMVFTGCAFADR HHHHCCCCCHHHHCCCCCHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEEEEECCHHHHH CPRAVSRCRAEAPALRQVAPGRDSRCHFAEELLDAH HHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHCCC >Mature Secondary Structure TAAAKIMQQPGEALIEIHDLTVQFRTAGRAINAVRGIDLSIGPGESVAILGESGSGKSV CHHHHHHHCCCHHHEEEEHHEEEEEHHCCHHHHHHCCEEEECCCCEEEEEECCCCCCCE TGKAVMGLINAPGKVSGSVRFAGRELVGLSETELQDVRGPGLAMVFQDSLDALNPVFSVG EHHHHHHHHCCCCCCCCEEEECCCHHCCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHH EQIMEILMVRLGWSREKSRAEAISLMQQVGIDSAEKRLSSYPHQFSGGMRQRICIAMAIA HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHH LKPQLLIADEPTTALDVTVQAGILKLIAKLQRESGMALLFVTHDLAVARQVASYLVVMYA HCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHH GRIVERGPIDALYARPAHPYTRALLNSNPGSVSHWSQLHPISGNPPDKTMVFTGCAFADR HHHHCCCCCHHHHCCCCCHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEEEEECCHHHHH CPRAVSRCRAEAPALRQVAPGRDSRCHFAEELLDAH HHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]