Click here to switch to the map view.

The map label for this gene is potC [H]

Identifier: 110634212

GI number: 110634212

Start: 2001463

End: 2002281

Strand: Reverse

Name: potC [H]

Synonym: Meso_1862

Alternate gene names: 110634212

Gene position: 2002281-2001463 (Counterclockwise)

Preceding gene: 110634213

Following gene: 110634211

Centisome position: 45.38

GC content: 58.73

Gene sequence:

>819_bases
ATGCCGCATTCAGTTAGCATACAGAAGGCGTCGGGGTGGCTGGGCAACGGGCTGCTGCGGATCTTCTCCTGGATCGTGTT
TCTCTTCCTCGTGTCGCCGCTTCTTGTGGTTGTGCCGATATCCTTCAGCGGCGGATCCTATCTTCGCTTCCCGCCCGAGA
GCTATTCGCTTCGCTGGTACGCGACCTATTTCGGGTCGGAGACCTGGATCGACGCCACCCTCCTGAGCATACTGGTCGGA
GTCGTGGCGACGGTCCTGTCGGTTGCCTTTGGGTTCCTGTTTGCGCTGGGTATCACGCGCGGATTGAGAAAATGGTCCGG
AGCGCTTGAGAAACTGGCGCTGGCGCCAATGATCGTACCGTCGATCGTCTATTCCGTCTCCATGTACGCGCTGTTCGCCG
ACCTCCGCTTGGTCGGCACCTGGTACGGCATCGCATTGGCCCATACCGTACTCTGCCTGCCCTTCGTGATCATCGTCCTG
ACCGCCGGGTTGAAGGAATTCGATATCGATCAGGAAACGGCCGCGATAGGGCTTGGAGCGAGCCGGCTGGTCGCGATCCG
GCGGATCACCATACCGCAGATCCGATCGAGCCTGTTCTCGGCGGCGTTTCTCGCATTCATAACCTCCTTCGATGAGCTGG
TCGTGGCGATGTTCCTTTCGGGAACGTTCGGCACCCTTCCCAAGAAAATGTTCGACAACATCCGCTTGCAGATCGACCCC
ACGATCGCCGCGGTCTCAGTGCTCGAAATCGCAATGGTCGTGATCGTCATGTTCGTGCTGCTCCGCATGAATAAAGGAAA
AGCAGGCCGCCTGGCTTGA

Upstream 100 bases:

>100_bases
GCGATGGCTGGAACCCTGTCCGCGGTGCTGATGGTCATCGTGATGATCACGTTCTTCATCATTAAACTTGCTACGCGACT
GTTTGTCAGGGGACGGGCCG

Downstream 100 bases:

>100_bases
AAGCAATGGAAACAGAGATGGAAAACATGCGCCCCGCCCTTACGACGTTTAATGGGCGATCCTTTGACGTGGCAATTATC
GGAGGAGGGATAAACGGATG

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; putrescine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MPHSVSIQKASGWLGNGLLRIFSWIVFLFLVSPLLVVVPISFSGGSYLRFPPESYSLRWYATYFGSETWIDATLLSILVG
VVATVLSVAFGFLFALGITRGLRKWSGALEKLALAPMIVPSIVYSVSMYALFADLRLVGTWYGIALAHTVLCLPFVIIVL
TAGLKEFDIDQETAAIGLGASRLVAIRRITIPQIRSSLFSAAFLAFITSFDELVVAMFLSGTFGTLPKKMFDNIRLQIDP
TIAAVSVLEIAMVVIVMFVLLRMNKGKAGRLA

Sequences:

>Translated_272_residues
MPHSVSIQKASGWLGNGLLRIFSWIVFLFLVSPLLVVVPISFSGGSYLRFPPESYSLRWYATYFGSETWIDATLLSILVG
VVATVLSVAFGFLFALGITRGLRKWSGALEKLALAPMIVPSIVYSVSMYALFADLRLVGTWYGIALAHTVLCLPFVIIVL
TAGLKEFDIDQETAAIGLGASRLVAIRRITIPQIRSSLFSAAFLAFITSFDELVVAMFLSGTFGTLPKKMFDNIRLQIDP
TIAAVSVLEIAMVVIVMFVLLRMNKGKAGRLA
>Mature_271_residues
PHSVSIQKASGWLGNGLLRIFSWIVFLFLVSPLLVVVPISFSGGSYLRFPPESYSLRWYATYFGSETWIDATLLSILVGV
VATVLSVAFGFLFALGITRGLRKWSGALEKLALAPMIVPSIVYSVSMYALFADLRLVGTWYGIALAHTVLCLPFVIIVLT
AGLKEFDIDQETAAIGLGASRLVAIRRITIPQIRSSLFSAAFLAFITSFDELVVAMFLSGTFGTLPKKMFDNIRLQIDPT
IAAVSVLEIAMVVIVMFVLLRMNKGKAGRLA

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787081, Length=245, Percent_Identity=31.4285714285714, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1787368, Length=222, Percent_Identity=25.2252252252252, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787714, Length=237, Percent_Identity=26.5822784810127, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788764, Length=165, Percent_Identity=26.6666666666667, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29708; Mature: 29577

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHSVSIQKASGWLGNGLLRIFSWIVFLFLVSPLLVVVPISFSGGSYLRFPPESYSLRWY
CCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEECCCCCCCEEEE
ATYFGSETWIDATLLSILVGVVATVLSVAFGFLFALGITRGLRKWSGALEKLALAPMIVP
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIVYSVSMYALFADLRLVGTWYGIALAHTVLCLPFVIIVLTAGLKEFDIDQETAAIGLGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHCCCH
SRLVAIRRITIPQIRSSLFSAAFLAFITSFDELVVAMFLSGTFGTLPKKMFDNIRLQIDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHCCCEEEECC
TIAAVSVLEIAMVVIVMFVLLRMNKGKAGRLA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
PHSVSIQKASGWLGNGLLRIFSWIVFLFLVSPLLVVVPISFSGGSYLRFPPESYSLRWY
CCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEECCCCCCCEEEE
ATYFGSETWIDATLLSILVGVVATVLSVAFGFLFALGITRGLRKWSGALEKLALAPMIVP
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIVYSVSMYALFADLRLVGTWYGIALAHTVLCLPFVIIVLTAGLKEFDIDQETAAIGLGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHCCCH
SRLVAIRRITIPQIRSSLFSAAFLAFITSFDELVVAMFLSGTFGTLPKKMFDNIRLQIDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHCCCEEEECC
TIAAVSVLEIAMVVIVMFVLLRMNKGKAGRLA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; putrescine [Periplasm]; H2O [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]