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The map label for this gene is omp85 [H]

Identifier: 110633741

GI number: 110633741

Start: 1480781

End: 1483147

Strand: Direct

Name: omp85 [H]

Synonym: Meso_1388

Alternate gene names: 110633741

Gene position: 1480781-1483147 (Clockwise)

Preceding gene: 110633740

Following gene: 110633742

Centisome position: 33.56

GC content: 60.12

Gene sequence:

>2367_bases
ATGAAGGCAGTTTCCAGATTGATGAGCGCCGTTTCGGCGGTGGCGCTGTCTGCCGGTATCGTCGTTAGCGGCGCGATGGT
TGCTGAGCTAACTGCAACCGTTTCGGCCTATGCCGCGACCGTCAGCAGAATAGAGGTGCGGGGGAACCGTCGGGTGGATG
CGGAGACGATTCGCAACCAAGTCGGCATTCGTCCCGGCCAGAACTTCACCACGGCCGATGTGGACGAGGCTGTGAAGCGC
CTTTTCGCAACGGGCCTGTTCGCCGACGTTTCAATCACCCAGCAGGGCGGCGCGCTTGTCGTCTCAGTTGACGAATACGC
AATCGTCAACCAGGTGCTCTTCCAGGGCAACAGGAAGGTCAAGGACCAGACCCTTTCCGAGGCGATCCAGCTGAAGCCCC
GTTCTGCTTTCTCCAATCAGCTCGTGGAGAGCGATGCGGAGGTGATCCGCGAGGCTTACCGGCGCGTCGGACGCGACGAG
GCGACGGTGACGAGCGAGGTCCAGGACTTGGGCGAGGGCCGGGTCAATGTGATCTTCCACGTCCAGGAAGGCGACCGCAC
CAAGATCACCGAGATCAATTTCGAGGGCAACACGGCGTTCAGCGACCGGCGCTTGCGGGACGTCATTACGACCAAGCGGT
CGAATGTCTTCTCGTTCATGATGCGCAACGACGTGTATGATGAGGCCCGGCTGCAGGCGGACGAGGAACTGCTCCGCCGC
TTCTACTACAATCGCGGATATGCCGATTTCCGCGTGATCTCCTCCGATGCGCAATTGGTGGACAACAAATACACCATCAC
CATCATGGTCGATGAAGGTCAGCGCTACACCTTCGGCGACGTGAGCATCGAATCGACCATTCCGGGCGTCGATGTCAGCG
CGTTGCAGTCCGCCTTGAAGACACGTCAGGGTGCGGTCTATAGCGCCGAGGATGTCGAACAGTCGATCATCGGTCTTACG
GAAGATGTGGCCGGCCATGGCTATGCGTTTGCTCAGGTCACTCCGCGAGGCAACCGCGACTTTCAGAACCGCACGATCTC
GGTCGTCTACTCCATCGACGAAGGCCCGCGCGCCTATGTCGAACGCATTGAGATTCGCGCCAACAACCGCACGCGCGACT
ATGTGATCCGCCGCGAGTTCGACGTCAGCGAAGGTGACGCTTTCAATCAGATCCTCATCCAGCGGGCCAAGCGCCGCCTT
GAGAGGCTGAACTTCTTCCAAACGGTGAACATCACCACCGTGCCGGGCTCGCAGCCCGATCAGGTGGTTCTGGTCGTCGA
TGTTGTGGAAAAGTCGACGGGCGAATTCTCGATCGGCGCCGGCTATACGACCAGCGCCTCTTCCGGCAGCAGCGGCGGCT
TCTCGGTCGAAGGATCCGTGACCGAGCGCAACTTCCTCGGCCGCGGTCAGTTCATCCGCTTCGCCGCGGCGGGCGGCGAG
AAATCGCGTGACTATACCTTCTCCTTCACGGAACCGTATTTCCTGGGCCGGCGCATCGCGGCGGGCTTCGATGTCTTCCG
CAATACCCGTACCTTCGAGGATTCGGACGGCGACAACATCTACGACCGTGAGGTTACCGGCGGTACCGTACGGTTCGGCC
TGCCGATCACCGATGCACTCACAGCACAGCTCGCCTACAATCTGACGCAGGAAGAGTACGAGCGTCTCGCCGATTCATCG
GACCTGTCGACCGGCATCAACCAGGCGCTTGATCAAGGCAAATGGGTGAAGTCGTCGGTTAGCGCCTCGTTGATCTATAA
CACGATCGACAACATGCAGAACCCGCATGACGGCATCTACGCTAACCTCACGACGGAGATCGCCGGCCTCGGCGGCGATG
CGAAGTGGGCGAAATTTACGGCGCGTGCAAACTACTATCGTACGCTGTCCGATGAGCTCGATCTGGTCGGTCTGTTGACG
GTTGGCGGCGGTCACATAGTCGCCTTTGGCGATGAACCGCTTCGGATCTTCGATCAGTTCAACAGCAACGACCGCATCAT
TCGCGGCTTCGAGTACAATGGCATTGGTCCATTCGAGCTGAGGTCTGCTGGCGACGACGATCGCGATTATCTCGGCGGCA
CGACCTACTTCCATGCTTCGGCGGAAGCGCAGTTCCCGCTGCCCATCGTGCCGGAGAGCTTCGGTCTGCGTGGTGCGGTC
TTCGCAGACGCCGCGACGCTTTATGGCAGCGATTATACCAGTCCCCTCGTGAGGGGGACCGATATGGAGTGGCGTGCCTC
CGTGGGCGCAAGCCTTATCTGGGCCTCGCCGTTCGGTCCGCTGCGCGTCGACTATGCCGAACCGGTGGTCAAGGAAGATA
CCGATCGCATTCGCCACTGGAATTTCGGCATCTCCACCCGGTTTTAG

Upstream 100 bases:

>100_bases
TGCGTGTAGTGAAATTCCAGCTATTAGGGGGTAACTGATCTTGCCCGTATTCTGGATTTCTCTCGGTGGGGATAACGAGA
ATAGAAGGTTTTAAGGCCCA

Downstream 100 bases:

>100_bases
GGCTTCACCGTATGTTGTCCGGGCGGCCTGACGGTGCGCCCGGACGAGAAGGCATCATGACGGAACCGGCTTTTTTTGCT
CCCGCACGCCGCTTTGAGGT

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 788; Mature: 788

Protein sequence:

>788_residues
MKAVSRLMSAVSAVALSAGIVVSGAMVAELTATVSAYAATVSRIEVRGNRRVDAETIRNQVGIRPGQNFTTADVDEAVKR
LFATGLFADVSITQQGGALVVSVDEYAIVNQVLFQGNRKVKDQTLSEAIQLKPRSAFSNQLVESDAEVIREAYRRVGRDE
ATVTSEVQDLGEGRVNVIFHVQEGDRTKITEINFEGNTAFSDRRLRDVITTKRSNVFSFMMRNDVYDEARLQADEELLRR
FYYNRGYADFRVISSDAQLVDNKYTITIMVDEGQRYTFGDVSIESTIPGVDVSALQSALKTRQGAVYSAEDVEQSIIGLT
EDVAGHGYAFAQVTPRGNRDFQNRTISVVYSIDEGPRAYVERIEIRANNRTRDYVIRREFDVSEGDAFNQILIQRAKRRL
ERLNFFQTVNITTVPGSQPDQVVLVVDVVEKSTGEFSIGAGYTTSASSGSSGGFSVEGSVTERNFLGRGQFIRFAAAGGE
KSRDYTFSFTEPYFLGRRIAAGFDVFRNTRTFEDSDGDNIYDREVTGGTVRFGLPITDALTAQLAYNLTQEEYERLADSS
DLSTGINQALDQGKWVKSSVSASLIYNTIDNMQNPHDGIYANLTTEIAGLGGDAKWAKFTARANYYRTLSDELDLVGLLT
VGGGHIVAFGDEPLRIFDQFNSNDRIIRGFEYNGIGPFELRSAGDDDRDYLGGTTYFHASAEAQFPLPIVPESFGLRGAV
FADAATLYGSDYTSPLVRGTDMEWRASVGASLIWASPFGPLRVDYAEPVVKEDTDRIRHWNFGISTRF

Sequences:

>Translated_788_residues
MKAVSRLMSAVSAVALSAGIVVSGAMVAELTATVSAYAATVSRIEVRGNRRVDAETIRNQVGIRPGQNFTTADVDEAVKR
LFATGLFADVSITQQGGALVVSVDEYAIVNQVLFQGNRKVKDQTLSEAIQLKPRSAFSNQLVESDAEVIREAYRRVGRDE
ATVTSEVQDLGEGRVNVIFHVQEGDRTKITEINFEGNTAFSDRRLRDVITTKRSNVFSFMMRNDVYDEARLQADEELLRR
FYYNRGYADFRVISSDAQLVDNKYTITIMVDEGQRYTFGDVSIESTIPGVDVSALQSALKTRQGAVYSAEDVEQSIIGLT
EDVAGHGYAFAQVTPRGNRDFQNRTISVVYSIDEGPRAYVERIEIRANNRTRDYVIRREFDVSEGDAFNQILIQRAKRRL
ERLNFFQTVNITTVPGSQPDQVVLVVDVVEKSTGEFSIGAGYTTSASSGSSGGFSVEGSVTERNFLGRGQFIRFAAAGGE
KSRDYTFSFTEPYFLGRRIAAGFDVFRNTRTFEDSDGDNIYDREVTGGTVRFGLPITDALTAQLAYNLTQEEYERLADSS
DLSTGINQALDQGKWVKSSVSASLIYNTIDNMQNPHDGIYANLTTEIAGLGGDAKWAKFTARANYYRTLSDELDLVGLLT
VGGGHIVAFGDEPLRIFDQFNSNDRIIRGFEYNGIGPFELRSAGDDDRDYLGGTTYFHASAEAQFPLPIVPESFGLRGAV
FADAATLYGSDYTSPLVRGTDMEWRASVGASLIWASPFGPLRVDYAEPVVKEDTDRIRHWNFGISTRF
>Mature_788_residues
MKAVSRLMSAVSAVALSAGIVVSGAMVAELTATVSAYAATVSRIEVRGNRRVDAETIRNQVGIRPGQNFTTADVDEAVKR
LFATGLFADVSITQQGGALVVSVDEYAIVNQVLFQGNRKVKDQTLSEAIQLKPRSAFSNQLVESDAEVIREAYRRVGRDE
ATVTSEVQDLGEGRVNVIFHVQEGDRTKITEINFEGNTAFSDRRLRDVITTKRSNVFSFMMRNDVYDEARLQADEELLRR
FYYNRGYADFRVISSDAQLVDNKYTITIMVDEGQRYTFGDVSIESTIPGVDVSALQSALKTRQGAVYSAEDVEQSIIGLT
EDVAGHGYAFAQVTPRGNRDFQNRTISVVYSIDEGPRAYVERIEIRANNRTRDYVIRREFDVSEGDAFNQILIQRAKRRL
ERLNFFQTVNITTVPGSQPDQVVLVVDVVEKSTGEFSIGAGYTTSASSGSSGGFSVEGSVTERNFLGRGQFIRFAAAGGE
KSRDYTFSFTEPYFLGRRIAAGFDVFRNTRTFEDSDGDNIYDREVTGGTVRFGLPITDALTAQLAYNLTQEEYERLADSS
DLSTGINQALDQGKWVKSSVSASLIYNTIDNMQNPHDGIYANLTTEIAGLGGDAKWAKFTARANYYRTLSDELDLVGLLT
VGGGHIVAFGDEPLRIFDQFNSNDRIIRGFEYNGIGPFELRSAGDDDRDYLGGTTYFHASAEAQFPLPIVPESFGLRGAV
FADAATLYGSDYTSPLVRGTDMEWRASVGASLIWASPFGPLRVDYAEPVVKEDTDRIRHWNFGISTRF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Homo sapiens, GI225543166, Length=459, Percent_Identity=25.7080610021786, Blast_Score=74, Evalue=5e-13,
Organism=Escherichia coli, GI1786374, Length=804, Percent_Identity=27.7363184079602, Blast_Score=261, Evalue=1e-70,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 87149; Mature: 87149

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAVSRLMSAVSAVALSAGIVVSGAMVAELTATVSAYAATVSRIEVRGNRRVDAETIRNQ
CHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHH
VGIRPGQNFTTADVDEAVKRLFATGLFADVSITQQGGALVVSVDEYAIVNQVLFQGNRKV
CCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEECHHHHHHHHHHCCCCCC
KDQTLSEAIQLKPRSAFSNQLVESDAEVIREAYRRVGRDEATVTSEVQDLGEGRVNVIFH
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEE
VQEGDRTKITEINFEGNTAFSDRRLRDVITTKRSNVFSFMMRNDVYDEARLQADEELLRR
EECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
FYYNRGYADFRVISSDAQLVDNKYTITIMVDEGQRYTFGDVSIESTIPGVDVSALQSALK
HHHCCCCCEEEEECCCHHEECCEEEEEEEEECCCEEEECCEEEECCCCCCCHHHHHHHHH
TRQGAVYSAEDVEQSIIGLTEDVAGHGYAFAQVTPRGNRDFQNRTISVVYSIDEGPRAYV
HHCCCEECHHHHHHHHHCCHHHHCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCHHHH
ERIEIRANNRTRDYVIRREFDVSEGDAFNQILIQRAKRRLERLNFFQTVNITTVPGSQPD
EEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC
QVVLVVDVVEKSTGEFSIGAGYTTSASSGSSGGFSVEGSVTERNFLGRGQFIRFAAAGGE
CEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCC
KSRDYTFSFTEPYFLGRRIAAGFDVFRNTRTFEDSDGDNIYDREVTGGTVRFGLPITDAL
CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEECCCHHHHH
TAQLAYNLTQEEYERLADSSDLSTGINQALDQGKWVKSSVSASLIYNTIDNMQNPHDGIY
HHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEE
ANLTTEIAGLGGDAKWAKFTARANYYRTLSDELDLVGLLTVGGGHIVAFGDEPLRIFDQF
EEEEEHHCCCCCCCHHHEEEECCCHHEECCCCCCEEEEEEECCCEEEEECCCCCEEHCCC
NSNDRIIRGFEYNGIGPFELRSAGDDDRDYLGGTTYFHASAEAQFPLPIVPESFGLRGAV
CCCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEH
FADAATLYGSDYTSPLVRGTDMEWRASVGASLIWASPFGPLRVDYAEPVVKEDTDRIRHW
HHHHHHHCCCCCCCCHHCCCCCCHHHCCCCEEEEECCCCCEEECCCCCCHHCCHHHHEEE
NFGISTRF
CCCCCCCC
>Mature Secondary Structure
MKAVSRLMSAVSAVALSAGIVVSGAMVAELTATVSAYAATVSRIEVRGNRRVDAETIRNQ
CHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHH
VGIRPGQNFTTADVDEAVKRLFATGLFADVSITQQGGALVVSVDEYAIVNQVLFQGNRKV
CCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEECHHHHHHHHHHCCCCCC
KDQTLSEAIQLKPRSAFSNQLVESDAEVIREAYRRVGRDEATVTSEVQDLGEGRVNVIFH
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEE
VQEGDRTKITEINFEGNTAFSDRRLRDVITTKRSNVFSFMMRNDVYDEARLQADEELLRR
EECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
FYYNRGYADFRVISSDAQLVDNKYTITIMVDEGQRYTFGDVSIESTIPGVDVSALQSALK
HHHCCCCCEEEEECCCHHEECCEEEEEEEEECCCEEEECCEEEECCCCCCCHHHHHHHHH
TRQGAVYSAEDVEQSIIGLTEDVAGHGYAFAQVTPRGNRDFQNRTISVVYSIDEGPRAYV
HHCCCEECHHHHHHHHHCCHHHHCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCHHHH
ERIEIRANNRTRDYVIRREFDVSEGDAFNQILIQRAKRRLERLNFFQTVNITTVPGSQPD
EEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC
QVVLVVDVVEKSTGEFSIGAGYTTSASSGSSGGFSVEGSVTERNFLGRGQFIRFAAAGGE
CEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCC
KSRDYTFSFTEPYFLGRRIAAGFDVFRNTRTFEDSDGDNIYDREVTGGTVRFGLPITDAL
CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEECCCHHHHH
TAQLAYNLTQEEYERLADSSDLSTGINQALDQGKWVKSSVSASLIYNTIDNMQNPHDGIY
HHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEE
ANLTTEIAGLGGDAKWAKFTARANYYRTLSDELDLVGLLTVGGGHIVAFGDEPLRIFDQF
EEEEEHHCCCCCCCHHHEEEECCCHHEECCCCCCEEEEEEECCCEEEEECCCCCEEHCCC
NSNDRIIRGFEYNGIGPFELRSAGDDDRDYLGGTTYFHASAEAQFPLPIVPESFGLRGAV
CCCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEH
FADAATLYGSDYTSPLVRGTDMEWRASVGASLIWASPFGPLRVDYAEPVVKEDTDRIRHW
HHHHHHHCCCCCCCCHHCCCCCCHHHCCCCEEEEECCCCCEEECCCCCCHHCCHHHHEEE
NFGISTRF
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]