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The map label for this gene is 110633504

Identifier: 110633504

GI number: 110633504

Start: 1259035

End: 1259847

Strand: Reverse

Name: 110633504

Synonym: Meso_1151

Alternate gene names: NA

Gene position: 1259847-1259035 (Counterclockwise)

Preceding gene: 110633506

Following gene: 110633495

Centisome position: 28.55

GC content: 57.07

Gene sequence:

>813_bases
ATGGCGCCACGACCTTATTGGAAGGGCTATTTGAAGCTCTCGCTCGTCACCTGCGCCGTGTCGCTGACGCCGGCCACGAG
CGACCGTGAAAAAATCCGCTTTCATACGATCAACCGCGAAACCGGAAACAGGGTTCGCAGCCGATATGTCGATGCGGAAA
CGGGCAAACCGGTTTCCGATGAGGACGAGGTCCGCGGCTATGAAACCGAAGAAGGCAAATATGTCACCTTCGAAGATGAG
GAGTTGGAAGCCGTAGGCCTCGATAGTACCCGCACAATCGACATCGACGAGTTCGTGCCCGCCGATTCGATAGACTGGGT
CTGGTTCGACAAACCCTATTACCTGATGCCGGATGACGAGGTAGCGCAGGAGGCCTTTGCCGTCATCCGCGAGGCTATGG
CGGCGACAAACACGGTCGGCATCTCCCGGCTGGTGCTTTCCCGGCGCGAAAGAGCCGTGCTCCTGCAGCCGCGGGACAAG
GGGATCGTGCTCTGGACGCTGCGCTACGGCGATGAAGTGCGCGATGCGAAGGATATTTTCGGCAATCTCGAGAACAAGAA
GGTGGAGTCGCGTCTCGTTTCCCTCATCGAAACGCTGATCCAGGACCTCACAAAAACCTGGGACCCGGAAATGGTGCAAG
ATCCGGTTCAGGAGCGCCTGAAGGAAATCATAGAAAGCAAGCAGAAGAAGCGGAAAAAGCCTGCACAGCGGAAGAAGACG
AAGGAAGATGAGCCGGAGCCACCGGATAACGTCATCAGCATCATGGATGCGCTTAAGCGCTCCATCACCGAGGAGAAGAA
GCGGAGCAGGTGA

Upstream 100 bases:

>100_bases
CTCACTTGTCGATGACGGCCGGGTGAGGACGAAGTGATCTGCCGCTCACGAAACCATCTTGAGCAAAATGCGTTTCCGTC
AGGTGCCTCTGGAGGGCCCT

Downstream 100 bases:

>100_bases
AACTCACGCGGCGCGGCGCGCCTTCCTGCCAAGCGGCACCGCCGCCCGCCAAAAATCCTCCCACGGGTCCTTCCCAATGG
CGGCCAAACGTGTTGGAGCA

Product: Ku domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MAPRPYWKGYLKLSLVTCAVSLTPATSDREKIRFHTINRETGNRVRSRYVDAETGKPVSDEDEVRGYETEEGKYVTFEDE
ELEAVGLDSTRTIDIDEFVPADSIDWVWFDKPYYLMPDDEVAQEAFAVIREAMAATNTVGISRLVLSRRERAVLLQPRDK
GIVLWTLRYGDEVRDAKDIFGNLENKKVESRLVSLIETLIQDLTKTWDPEMVQDPVQERLKEIIESKQKKRKKPAQRKKT
KEDEPEPPDNVISIMDALKRSITEEKKRSR

Sequences:

>Translated_270_residues
MAPRPYWKGYLKLSLVTCAVSLTPATSDREKIRFHTINRETGNRVRSRYVDAETGKPVSDEDEVRGYETEEGKYVTFEDE
ELEAVGLDSTRTIDIDEFVPADSIDWVWFDKPYYLMPDDEVAQEAFAVIREAMAATNTVGISRLVLSRRERAVLLQPRDK
GIVLWTLRYGDEVRDAKDIFGNLENKKVESRLVSLIETLIQDLTKTWDPEMVQDPVQERLKEIIESKQKKRKKPAQRKKT
KEDEPEPPDNVISIMDALKRSITEEKKRSR
>Mature_269_residues
APRPYWKGYLKLSLVTCAVSLTPATSDREKIRFHTINRETGNRVRSRYVDAETGKPVSDEDEVRGYETEEGKYVTFEDEE
LEAVGLDSTRTIDIDEFVPADSIDWVWFDKPYYLMPDDEVAQEAFAVIREAMAATNTVGISRLVLSRRERAVLLQPRDKG
IVLWTLRYGDEVRDAKDIFGNLENKKVESRLVSLIETLIQDLTKTWDPEMVQDPVQERLKEIIESKQKKRKKPAQRKKTK
EDEPEPPDNVISIMDALKRSITEEKKRSR

Specific function: Could be involved in DNA repair [H]

COG id: COG1273

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ku domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006164
- InterPro:   IPR009187
- InterPro:   IPR016194 [H]

Pfam domain/function: PF02735 Ku [H]

EC number: NA

Molecular weight: Translated: 31281; Mature: 31150

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPRPYWKGYLKLSLVTCAVSLTPATSDREKIRFHTINRETGNRVRSRYVDAETGKPVSD
CCCCCCHHHHHHHHHHHHHEECCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCC
EDEVRGYETEEGKYVTFEDEELEAVGLDSTRTIDIDEFVPADSIDWVWFDKPYYLMPDDE
HHHHCCEECCCCCEEEEECCCCEEECCCCCEEECHHHCCCCCCCCEEEECCCEEECCCHH
VAQEAFAVIREAMAATNTVGISRLVLSRRERAVLLQPRDKGIVLWTLRYGDEVRDAKDIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCHHHHHHHHH
GNLENKKVESRLVSLIETLIQDLTKTWDPEMVQDPVQERLKEIIESKQKKRKKPAQRKKT
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
KEDEPEPPDNVISIMDALKRSITEEKKRSR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
APRPYWKGYLKLSLVTCAVSLTPATSDREKIRFHTINRETGNRVRSRYVDAETGKPVSD
CCCCCHHHHHHHHHHHHHEECCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCC
EDEVRGYETEEGKYVTFEDEELEAVGLDSTRTIDIDEFVPADSIDWVWFDKPYYLMPDDE
HHHHCCEECCCCCEEEEECCCCEEECCCCCEEECHHHCCCCCCCCEEEECCCEEECCCHH
VAQEAFAVIREAMAATNTVGISRLVLSRRERAVLLQPRDKGIVLWTLRYGDEVRDAKDIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCHHHHHHHHH
GNLENKKVESRLVSLIETLIQDLTKTWDPEMVQDPVQERLKEIIESKQKKRKKPAQRKKT
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
KEDEPEPPDNVISIMDALKRSITEEKKRSR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA