Click here to switch to the map view.

The map label for this gene is 110633495

Identifier: 110633495

GI number: 110633495

Start: 1250018

End: 1250548

Strand: Reverse

Name: 110633495

Synonym: Meso_1142

Alternate gene names: NA

Gene position: 1250548-1250018 (Counterclockwise)

Preceding gene: 110633504

Following gene: 110633482

Centisome position: 28.34

GC content: 64.41

Gene sequence:

>531_bases
ATGTCGTTGCGGGTACGGAAAATCAATGGGAGCCATGCCTGCCGGGCGCTTCTCGCCGCGGCGGTCGGTGGCGCCGCTTT
GGCGGTTTCAGGCTGCGGCAACGTGGCCTCCACGCTCAACGCGCGGGAAACCCTGACGCAGGGCTATGTGATCGACCCGC
AGGCGCTGGAGCTGGTGCCGGTGGGATCAAGCCGCGAGCAGGTGCTTTTGGCATTGGGCACGCCGTCGACCACAGCCACC
TTCGATAACGAGGTTTTCTATTACATCTCTCAAAAGCGAGTGCGCGGCGCGGCTTTCATGAACGCGAAGCTGGTCGACCA
GCAGGTGCTTGCCGTTTATTTCGGGCCAGACCAGCGCGTGACGCAGATCGCGCATTACGGGCTGCAGGACGGGAAGGTGT
TCGACTTCATCTCGCGAACCACGCCGACCGGCGGCCGCGACCAGAATTTCATTGCACAGATGATTGCGGGTGTCGCGCGC
GGCGCGCCGCCTGCCAATCCGCTGGGCGCCGCTGGCGGCGGCGGTCAGTAA

Upstream 100 bases:

>100_bases
TAGCCAGGTCCAGTTGCATCGGCGCGAAAGCTGGTTTACCGGTTTTGCCGACCTGTGCAAGGTGACGGCCTTTCTCCAGA
CAGGCCAGCAAATCAGGGAG

Downstream 100 bases:

>100_bases
AGAGCGATCGATCCCACGAAAAAGGCCCGCAGAAATGCGGGCCTTTTTGCTTTTGATGCTCTTTGCCTAAAGCGCTAGTG
CGCGAGTACGGCGAGCAGCA

Product: SmpA/OmlA

Products: NA

Alternate protein names: SmpA/OmlA; SmpA/OmlA Domain Protein; Outer Membrane Protein; Small Protein A; SmpA/OmlA Family Outer Membrane Protein; SmAll Protein A; SmpA / OmlA Family; SmpA Protein; SmpA/OmlA Family Protein

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSLRVRKINGSHACRALLAAAVGGAALAVSGCGNVASTLNARETLTQGYVIDPQALELVPVGSSREQVLLALGTPSTTAT
FDNEVFYYISQKRVRGAAFMNAKLVDQQVLAVYFGPDQRVTQIAHYGLQDGKVFDFISRTTPTGGRDQNFIAQMIAGVAR
GAPPANPLGAAGGGGQ

Sequences:

>Translated_176_residues
MSLRVRKINGSHACRALLAAAVGGAALAVSGCGNVASTLNARETLTQGYVIDPQALELVPVGSSREQVLLALGTPSTTAT
FDNEVFYYISQKRVRGAAFMNAKLVDQQVLAVYFGPDQRVTQIAHYGLQDGKVFDFISRTTPTGGRDQNFIAQMIAGVAR
GAPPANPLGAAGGGGQ
>Mature_175_residues
SLRVRKINGSHACRALLAAAVGGAALAVSGCGNVASTLNARETLTQGYVIDPQALELVPVGSSREQVLLALGTPSTTATF
DNEVFYYISQKRVRGAAFMNAKLVDQQVLAVYFGPDQRVTQIAHYGLQDGKVFDFISRTTPTGGRDQNFIAQMIAGVARG
APPANPLGAAGGGGQ

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18351; Mature: 18220

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRVRKINGSHACRALLAAAVGGAALAVSGCGNVASTLNARETLTQGYVIDPQALELVP
CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCEEECCCCEEEEE
VGSSREQVLLALGTPSTTATFDNEVFYYISQKRVRGAAFMNAKLVDQQVLAVYFGPDQRV
CCCCCCEEEEEECCCCCCEEECCEEEEEEECCHHHHHHHHHHHHHCCEEEEEEECCCHHH
TQIAHYGLQDGKVFDFISRTTPTGGRDQNFIAQMIAGVARGAPPANPLGAAGGGGQ
HHHHHCCCCCCCEEEHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SLRVRKINGSHACRALLAAAVGGAALAVSGCGNVASTLNARETLTQGYVIDPQALELVP
CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCEEECCCCEEEEE
VGSSREQVLLALGTPSTTATFDNEVFYYISQKRVRGAAFMNAKLVDQQVLAVYFGPDQRV
CCCCCCEEEEEECCCCCCEEECCEEEEEEECCHHHHHHHHHHHHHCCEEEEEEECCCHHH
TQIAHYGLQDGKVFDFISRTTPTGGRDQNFIAQMIAGVARGAPPANPLGAAGGGGQ
HHHHHCCCCCCCEEEHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA