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The map label for this gene is rssA [H]

Identifier: 110633356

GI number: 110633356

Start: 1100226

End: 1101206

Strand: Reverse

Name: rssA [H]

Synonym: Meso_1002

Alternate gene names: 110633356

Gene position: 1101206-1100226 (Counterclockwise)

Preceding gene: 110633357

Following gene: 110633355

Centisome position: 24.96

GC content: 63.91

Gene sequence:

>981_bases
ATGCTCGATTGGGGACCGCTCCGCGGAAAATCCGAGGGCAGTGACAACAACGCCATGAAGCCTCCGGCTAAGCAGCTTCA
CGCCGCCGACCAAGGACCAGCTATCGCACTGGCGCTCGGCGGAGGCGCCGCGCGCGGCTGGGCCCATATCGGGGTGCTGC
GCGCACTGGACGAGGCCGGTATTCGAATTTCCATGATCGCGGGCACCTCCATCGGCGCGCTTGTGGGCGGCTGTTATCTT
GCCGGTAAGCTGGATGCGCTCGAAGAGTTTGCGCGTTCGCTGACCCGCCGCCGCATCCTGGGTCTGCTCGATCTCAATTT
CGGCGGCAGCGGGCTCCTGGGCGGCATGAAGCTCACTCAGAGAATGCAGGAGCACCTCAACGGGCTCACCTTCGAGGATT
TGCCGAAACCGTTCGTCTGCGTCGCGGCGGAAATCCGCACCGGGCATGAAATCTGGATTTCCAGTGGTTCCCTTATCACG
GCCATGCGGGCCTCCTACGCCCTGCCGGGCGTTTTCGAGCCGGTGGTCTGCAACGGCCGCGTGCTCATCGACGGCGCGCT
TGTCAATCCCGTTCCCGTAACAGTCTGCCGGGCGCACGAGCAGCCGCTCGTCGTGGCCGTCAATCTCCATTACGACGTCT
TTGGCCGGGCGGCAGTCATCCGGCACAGCGCCGACCTGCCGGAAAAGGAAGGCAAGCCCCTGGACGGCGAAAAGGCGCCT
CTGCTTGTCGACAAAGGTCCACGGCGGCACGAAATGCGGCTTGGCATTACCGGAGTGATGGTCGAGGCCTTCAACATCAT
CCAGGACCGCATTTCCCGCGCGCGTCTGGCGGGCGATCCGCCGGACCTGTCGCTCCAGCCGAAGCTTGGCCACATCGGGC
TGACGGAGTTCTACCGTGCGGGCGAAGCGATCGATGTCGGCTATGAGACGACCAAGTCCCAGCTTGCCGATCTGGAACGC
ATGCTGAGCGTCTTGACCTAG

Upstream 100 bases:

>100_bases
TTTCGGGTGAGCGGAGTCACCAATTCGGATCTTTGCCGTCCCGGATTCATGAATTTATTACGGTCCCTTGGCATTGTTGC
CTGGGGCGTAGGAGATTGCG

Downstream 100 bases:

>100_bases
CCGTAGAGTGAAAGGCGCGGAGTTGCGCGCGTGCCCTCTTCTGCAAATGCCTGCAGGGTGAGCAAGGCAGAATGCCGGAC
GCGCCACTTCAGGTTTTTGC

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MLDWGPLRGKSEGSDNNAMKPPAKQLHAADQGPAIALALGGGAARGWAHIGVLRALDEAGIRISMIAGTSIGALVGGCYL
AGKLDALEEFARSLTRRRILGLLDLNFGGSGLLGGMKLTQRMQEHLNGLTFEDLPKPFVCVAAEIRTGHEIWISSGSLIT
AMRASYALPGVFEPVVCNGRVLIDGALVNPVPVTVCRAHEQPLVVAVNLHYDVFGRAAVIRHSADLPEKEGKPLDGEKAP
LLVDKGPRRHEMRLGITGVMVEAFNIIQDRISRARLAGDPPDLSLQPKLGHIGLTEFYRAGEAIDVGYETTKSQLADLER
MLSVLT

Sequences:

>Translated_326_residues
MLDWGPLRGKSEGSDNNAMKPPAKQLHAADQGPAIALALGGGAARGWAHIGVLRALDEAGIRISMIAGTSIGALVGGCYL
AGKLDALEEFARSLTRRRILGLLDLNFGGSGLLGGMKLTQRMQEHLNGLTFEDLPKPFVCVAAEIRTGHEIWISSGSLIT
AMRASYALPGVFEPVVCNGRVLIDGALVNPVPVTVCRAHEQPLVVAVNLHYDVFGRAAVIRHSADLPEKEGKPLDGEKAP
LLVDKGPRRHEMRLGITGVMVEAFNIIQDRISRARLAGDPPDLSLQPKLGHIGLTEFYRAGEAIDVGYETTKSQLADLER
MLSVLT
>Mature_326_residues
MLDWGPLRGKSEGSDNNAMKPPAKQLHAADQGPAIALALGGGAARGWAHIGVLRALDEAGIRISMIAGTSIGALVGGCYL
AGKLDALEEFARSLTRRRILGLLDLNFGGSGLLGGMKLTQRMQEHLNGLTFEDLPKPFVCVAAEIRTGHEIWISSGSLIT
AMRASYALPGVFEPVVCNGRVLIDGALVNPVPVTVCRAHEQPLVVAVNLHYDVFGRAAVIRHSADLPEKEGKPLDGEKAP
LLVDKGPRRHEMRLGITGVMVEAFNIIQDRISRARLAGDPPDLSLQPKLGHIGLTEFYRAGEAIDVGYETTKSQLADLER
MLSVLT

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656039, Length=185, Percent_Identity=32.4324324324324, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI260656037, Length=185, Percent_Identity=32.4324324324324, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI260656043, Length=185, Percent_Identity=32.4324324324324, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI260656041, Length=185, Percent_Identity=32.4324324324324, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI116256487, Length=185, Percent_Identity=32.4324324324324, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI148727335, Length=186, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI148727290, Length=186, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=5e-19,
Organism=Escherichia coli, GI226510936, Length=292, Percent_Identity=36.3013698630137, Blast_Score=189, Evalue=2e-49,
Organism=Caenorhabditis elegans, GI71997299, Length=168, Percent_Identity=32.7380952380952, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71997289, Length=168, Percent_Identity=32.7380952380952, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193204778, Length=186, Percent_Identity=32.7956989247312, Blast_Score=75, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6323581, Length=186, Percent_Identity=32.7956989247312, Blast_Score=90, Evalue=5e-19,
Organism=Drosophila melanogaster, GI281376913, Length=185, Percent_Identity=32.4324324324324, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI28571388, Length=185, Percent_Identity=31.8918918918919, Blast_Score=83, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 34883; Mature: 34883

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDWGPLRGKSEGSDNNAMKPPAKQLHAADQGPAIALALGGGAARGWAHIGVLRALDEAG
CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC
IRISMIAGTSIGALVGGCYLAGKLDALEEFARSLTRRRILGLLDLNFGGSGLLGGMKLTQ
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHH
RMQEHLNGLTFEDLPKPFVCVAAEIRTGHEIWISSGSLITAMRASYALPGVFEPVVCNGR
HHHHHHCCCCHHHCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHCCCCCCCCEEECCE
VLIDGALVNPVPVTVCRAHEQPLVVAVNLHYDVFGRAAVIRHSADLPEKEGKPLDGEKAP
EEEECCCCCCCCEEEEECCCCCEEEEEEECHHHHCCHHEEECCCCCCHHCCCCCCCCCCC
LLVDKGPRRHEMRLGITGVMVEAFNIIQDRISRARLAGDPPDLSLQPKLGHIGLTEFYRA
EEECCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHC
GEAIDVGYETTKSQLADLERMLSVLT
CCEEECCCHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MLDWGPLRGKSEGSDNNAMKPPAKQLHAADQGPAIALALGGGAARGWAHIGVLRALDEAG
CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC
IRISMIAGTSIGALVGGCYLAGKLDALEEFARSLTRRRILGLLDLNFGGSGLLGGMKLTQ
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHH
RMQEHLNGLTFEDLPKPFVCVAAEIRTGHEIWISSGSLITAMRASYALPGVFEPVVCNGR
HHHHHHCCCCHHHCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHCCCCCCCCEEECCE
VLIDGALVNPVPVTVCRAHEQPLVVAVNLHYDVFGRAAVIRHSADLPEKEGKPLDGEKAP
EEEECCCCCCCCEEEEECCCCCEEEEEEECHHHHCCHHEEECCCCCCHHCCCCCCCCCCC
LLVDKGPRRHEMRLGITGVMVEAFNIIQDRISRARLAGDPPDLSLQPKLGHIGLTEFYRA
EEECCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHC
GEAIDVGYETTKSQLADLERMLSVLT
CCEEECCCHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8282700; 9097039; 8905232; 9278503 [H]