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The map label for this gene is rpoZ

Identifier: 110633299

GI number: 110633299

Start: 1042367

End: 1042762

Strand: Direct

Name: rpoZ

Synonym: Meso_0945

Alternate gene names: 110633299

Gene position: 1042367-1042762 (Clockwise)

Preceding gene: 110633296

Following gene: 110633300

Centisome position: 23.62

GC content: 60.35

Gene sequence:

>396_bases
ATGGCCCGTGTGACCGTTGAGGACTGCATCGACAAGGTCGAGAACCGCTTTGATCTGGTGCTTCTCGCAAGCCATCGTGC
GCGCCAGATCTCCCAGGGCGAGCAGATCACCATAGATCGCGACAACGATAAGAATCCTGTGGTGGCGCTTCGCGAGATCG
CTGACGAGACTTTGTCTCCGGGCGACCTCAAGGAGGCTCTGATCCACTCGCTGCAGAAGCATGTGGAGGTGGACGAGCCC
GAGGCAGACCTGCCGCAGATCGCCAGCCAGGCGGAAGAAACTCCGGATGCCGAACTTGCGCCGGAGGAGAACATCGCCTT
CGACCGTATGAGCGAGGAAGAGCTGCTGGCCGGCATCGAAGGACTGGTCCCCCCGGAGAAGAACGACGATTTCTGA

Upstream 100 bases:

>100_bases
GGTTAGAGGCCGACGGCCGTGGGGTGTTGTATTTTTCACGTGGAAAAGCTATGGACCCAGCAGTTTCCGAAAATTTCGCG
CGAATGAAAGGGGCGAACAT

Downstream 100 bases:

>100_bases
TCGGCGTTCTTGCGCGGCCGCCTGGCGGCGCAAGTCAACTCCTCCGGACGAATTTCACATGCGCCGCATGCCTGATGCGG
CGCATGATTCATGTTATAGG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MARVTVEDCIDKVENRFDLVLLASHRARQISQGEQITIDRDNDKNPVVALREIADETLSPGDLKEALIHSLQKHVEVDEP
EADLPQIASQAEETPDAELAPEENIAFDRMSEEELLAGIEGLVPPEKNDDF

Sequences:

>Translated_131_residues
MARVTVEDCIDKVENRFDLVLLASHRARQISQGEQITIDRDNDKNPVVALREIADETLSPGDLKEALIHSLQKHVEVDEP
EADLPQIASQAEETPDAELAPEENIAFDRMSEEELLAGIEGLVPPEKNDDF
>Mature_130_residues
ARVTVEDCIDKVENRFDLVLLASHRARQISQGEQITIDRDNDKNPVVALREIADETLSPGDLKEALIHSLQKHVEVDEPE
ADLPQIASQAEETPDAELAPEENIAFDRMSEEELLAGIEGLVPPEKNDDF

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=54, Percent_Identity=55.5555555555556, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_MESSB (Q11JT3)

Other databases:

- EMBL:   CP000390
- RefSeq:   YP_673507.1
- STRING:   Q11JT3
- GeneID:   4180322
- GenomeReviews:   CP000390_GR
- KEGG:   mes:Meso_0945
- NMPDR:   fig|266779.1.peg.3915
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   KVDNRFE
- PhylomeDB:   Q11JT3
- ProtClustDB:   PRK00392
- BioCyc:   MSP266779:MESO_0945-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 14612; Mature: 14481

Theoretical pI: Translated: 3.95; Mature: 3.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCIDKVENRFDLVLLASHRARQISQGEQITIDRDNDKNPVVALREIADETLSP
CCCCCHHHHHHHHHCHHCEEEECCHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
GDLKEALIHSLQKHVEVDEPEADLPQIASQAEETPDAELAPEENIAFDRMSEEELLAGIE
CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHCCCHHHHHHHHH
GLVPPEKNDDF
CCCCCCCCCCC
>Mature Secondary Structure 
ARVTVEDCIDKVENRFDLVLLASHRARQISQGEQITIDRDNDKNPVVALREIADETLSP
CCCCHHHHHHHHHCHHCEEEECCHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
GDLKEALIHSLQKHVEVDEPEADLPQIASQAEETPDAELAPEENIAFDRMSEEELLAGIE
CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHCCCHHHHHHHHH
GLVPPEKNDDF
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA