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The map label for this gene is smpB

Identifier: 110633296

GI number: 110633296

Start: 1040074

End: 1040541

Strand: Direct

Name: smpB

Synonym: Meso_0942

Alternate gene names: 110633296

Gene position: 1040074-1040541 (Clockwise)

Preceding gene: 110633295

Following gene: 110633299

Centisome position: 23.57

GC content: 61.11

Gene sequence:

>468_bases
ATGGCCAAGAACACGAACATCACGACGGTTGCCGACAACCGTAAGGCGCGTTTCTCCTATGAGGTGATCGACACGCTGGA
AGCGGGCCTCGTGCTTTCGGGCACGGAGGTGAAGTCGTTGCGCGAGGGGCATGCGAACATCCAGGAATCCTATGCGGCGG
TGGAAGGCGGCGAGATCTGGCTGATCAATTCCCATATCCCCGAATACTTCGCCGGTAACCGCTTCAATCACGAGCCGCGC
CGCCGCCGGAAGCTCCTCCTTTCCAAGAAGGAGATGGCCCGGCTGGCGCAGGCCGTGGAGCGGGAGGGGATGACGATGGT
GCCCCTGAAGCTTTATTTCAACGAGCGCGGCATCGCCAAGCTGCTGCTTGCGATCGCACGCGGCAAGAAGCTTCACGACA
AGCGCGAGACCTTGAAGCAGCGCGATTGGAGCCGGGAGCAGGCGCGGCTTTTGAAGGAAAGAGGGTAG

Upstream 100 bases:

>100_bases
GCTGGTCACGGTCGAGGCATCGACGGCCGAGAAGATTGATGCGGCGATGAAGCACGCGGGGCTCTTGAACTGACGCGCCG
ATGCAGGCATTCCCTTCCTC

Downstream 100 bases:

>100_bases
GGCAGTAGGCCAGCGACTACAGCCCACAACAATGCTCCCGCTTGACCTTCAGTACCGGAAACGCGTCGATATTCAGGCAT
GGATCCTCGGGTCAAGCCCG

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MAKNTNITTVADNRKARFSYEVIDTLEAGLVLSGTEVKSLREGHANIQESYAAVEGGEIWLINSHIPEYFAGNRFNHEPR
RRRKLLLSKKEMARLAQAVEREGMTMVPLKLYFNERGIAKLLLAIARGKKLHDKRETLKQRDWSREQARLLKERG

Sequences:

>Translated_155_residues
MAKNTNITTVADNRKARFSYEVIDTLEAGLVLSGTEVKSLREGHANIQESYAAVEGGEIWLINSHIPEYFAGNRFNHEPR
RRRKLLLSKKEMARLAQAVEREGMTMVPLKLYFNERGIAKLLLAIARGKKLHDKRETLKQRDWSREQARLLKERG
>Mature_154_residues
AKNTNITTVADNRKARFSYEVIDTLEAGLVLSGTEVKSLREGHANIQESYAAVEGGEIWLINSHIPEYFAGNRFNHEPRR
RRKLLLSKKEMARLAQAVEREGMTMVPLKLYFNERGIAKLLLAIARGKKLHDKRETLKQRDWSREQARLLKERG

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=145, Percent_Identity=43.448275862069, Blast_Score=115, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_MESSB (Q11JT6)

Other databases:

- EMBL:   CP000390
- RefSeq:   YP_673504.1
- ProteinModelPortal:   Q11JT6
- SMR:   Q11JT6
- STRING:   Q11JT6
- GeneID:   4180319
- GenomeReviews:   CP000390_GR
- KEGG:   mes:Meso_0942
- NMPDR:   fig|266779.1.peg.3912
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- PhylomeDB:   Q11JT6
- ProtClustDB:   PRK05422
- BioCyc:   MSP266779:MESO_0942-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17860; Mature: 17729

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNTNITTVADNRKARFSYEVIDTLEAGLVLSGTEVKSLREGHANIQESYAAVEGGEIW
CCCCCCEEEEECCCCHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHCCCCEEE
LINSHIPEYFAGNRFNHEPRRRRKLLLSKKEMARLAQAVEREGMTMVPLKLYFNERGIAK
EECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHH
LLLAIARGKKLHDKRETLKQRDWSREQARLLKERG
HHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure 
AKNTNITTVADNRKARFSYEVIDTLEAGLVLSGTEVKSLREGHANIQESYAAVEGGEIW
CCCCCEEEEECCCCHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHCCCCEEE
LINSHIPEYFAGNRFNHEPRRRRKLLLSKKEMARLAQAVEREGMTMVPLKLYFNERGIAK
EECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHH
LLLAIARGKKLHDKRETLKQRDWSREQARLLKERG
HHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA