| Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
|---|---|
| Accession | NC_008229 |
| Length | 1,553,927 |
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The map label for this gene is flgE [H]
Identifier: 109947758
GI number: 109947758
Start: 1066444
End: 1068600
Strand: Reverse
Name: flgE [H]
Synonym: Hac_1233
Alternate gene names: 109947758
Gene position: 1068600-1066444 (Counterclockwise)
Preceding gene: 109947759
Following gene: 109947757
Centisome position: 68.77
GC content: 44.18
Gene sequence:
>2157_bases ATGCTTAGGTCTTTATGGTCTGGTGTTAATGGGATGCAAGCCCACCAAATCGCTTTGGATATTGAAAGTAATAATATTGC GAATGTGAATACCACCGGTTTTAAATATTCTAGAGCTTCTTTTGTGGATATGCTCTCTCAAGTCAAACTCATCGCTACTG CACCTTATAAAAACGGGTTAGCAGGGCAGAATGACTTTTCAGTGGGGCTTGGGGTAGGCGTGGATGCGACGACTAAAATC TTTTCACAAGGCAATATCCAAAACACGGATGTCAAAACCGATCTAGCGATTCAAGGCGATGGCTTTTTTATCATTAGCCC TGATAGGGGGATCACTCGTAATTTCACTAGAGATGGGGAGTTCCTTTTTGACTCGCAAGGGAGTTTGGTTACCACCGGAG GGCTTGTGGTGCAAGGGTGGGTGAGAAATGGTAATGATACCGGTAACAAAGGGAGTGATACAGACGCTTTAAAAGTGGAT AATACTGGTCCATTAGAAAATATTAGAATTGATCCAGGAATGGTGATGCCAGCTAGAGCGAGTAACCGCATTTCTATGAG AGCGAATTTAAACGCTGGAAGGCATGCGGATCAAACAGCGGCGATATTTGCTTTGGATTCTTCAGCCAAAACCCCATCAG ATGGCATTAACCCTGTGTATGATTCAAGCACAAATCTAGCTCAAGTCGCCGAAGACATGGGCTCTTTATACAATGAAGAT GGCGACGCTCTTTTATTGAATGAAAATCAGGGGATTTGGGTGAGTTATAAGAGTGCCAAAATGGTCAAAGACATCCTCCC TTCTGCAGAAAACAGCACGCTTGAATTGAATGGAGTTAAGATTTCTTTCACTAACGATTCAGCGGTGAGTAGGACTTCAA GTTTAGTGGCGGCTAAAAATGCGATCAATGCGGTTAAAAGCCAAACAGGGATTGAAGCTTATTTGGACGGCAAGCAATTG CGTTTGGAAAACACCAATGAATTAGACGGCGATGAAAAGCTTAAAAACATTGTGGTTACTCAAGCTGGGACTGGGGCGTT CGCTAACTTTTTAGATGGCGATAAAGATGTAACGGCTTTCAAATACAGTTACACACATTCTATTAGCCCTAACGCCAATA GCGGGCAATTTAGGACCACTGAAGACTTGCGCGCTTTAATTCAGCATGACGCCAATATCGTTAAAGATCCTAGCTTAGCG GATAATTACCAAGACTCAGCCGCTTCTGTGGGGGTTAGCATCAACCAATACGGCATGTTTGAGATCAACAACAAAGACAA CAAAAACACTATTAAAGAAAACCTTAATATCTTTGTGAGTGGGTATTCTTCAGATAGCGTCACGAATAATGTTTTGTTTA AAAATGCGATGAAAGGGCTCAACACCGCTTCTTTGATTGAAGGAGGGGCGCCAGCGAGCAGCTCTAAATTCACCCATGCT ACGCATGCAACAAGCATTGATGTGATAGATAGTTTAGGCACCAAGCACACCATGCGCATTGAGTTTTATAGGAGTGGGGG GGCGGAATGGAATTTCAGGGTGATCGTGCCTGAGCCTGCGGAATTAGTGGGGGGTTCAGCGGCTAGGCCGAATGTGTTTG AAGGAGGTCGTTTGCATTTCAATAATGACGGATCGCTCGCTGGCATGAACCCGCCTCTTTTGCAATTTGACCCTAAAAAT GGTGCTGATGCCCCCCAACGCATCAATTTAGCCTTTGGTTCATCAGGGAGTTTTGATGGATTAACAAGCGTGGATAAGAT TTCTGAAACTTATGCGATTGAACAAAACGGCTATCAAGCAGGCGATTTAATGGATGTCCGTTTTGATTCTGATGGGGTGC TTTTAGGGGCGTTTAGTAATGGCAGGACTTTGGCGCTTGCCCAAGTGGCTTTAGCGAATTTCGCTAACGATGCGGGCTTG CAAGCTTTGGGAGGGAATGTCTTTTCTCAAACCGGAAACTCTGGGCAAGCCTTAATTGGTGCGGCTAATACGGGGCGTAG AGGCTCTATTTCAGGATCTAAATTGGAGTCTAGTAATGTGGATTTAAGCCGGAGTTTAACGAATTTGATTGTGGTCCAAA GGGGCTTCCAAGCGAACTCTAAAGCGGTAACCACATCCGATCAAATCCTTAACACTTTGTTAAACCTTAAGCAATAA
Upstream 100 bases:
>100_bases AAAACCTTAAAATCCGCAATCAATCGTTTTAAAAAGCCATTTGGGAACGACTTTTGCTTTATTTGGCATAGATTGAATTT CTTTAAATTAAAGGATAACC
Downstream 100 bases:
>100_bases GGATCAAAAATTACTCTAATACAATATAATGGAGGCATATTTTAAAGATTAAGGTTTAGTATGCATGAATACTCGGTCGT TTCTTCTTTAATCGCTCTTT
Product: flagellar hook protein FlgE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 718; Mature: 718
Protein sequence:
>718_residues MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVGLGVGVDATTKI FSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSLVTTGGLVVQGWVRNGNDTGNKGSDTDALKVD NTGPLENIRIDPGMVMPARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSDGINPVYDSSTNLAQVAEDMGSLYNED GDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQL RLENTNELDGDEKLKNIVVTQAGTGAFANFLDGDKDVTAFKYSYTHSISPNANSGQFRTTEDLRALIQHDANIVKDPSLA DNYQDSAASVGVSINQYGMFEINNKDNKNTIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNTASLIEGGAPASSSKFTHA THATSIDVIDSLGTKHTMRIEFYRSGGAEWNFRVIVPEPAELVGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKN GADAPQRINLAFGSSGSFDGLTSVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGL QALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLKQ
Sequences:
>Translated_718_residues MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVGLGVGVDATTKI FSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSLVTTGGLVVQGWVRNGNDTGNKGSDTDALKVD NTGPLENIRIDPGMVMPARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSDGINPVYDSSTNLAQVAEDMGSLYNED GDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQL RLENTNELDGDEKLKNIVVTQAGTGAFANFLDGDKDVTAFKYSYTHSISPNANSGQFRTTEDLRALIQHDANIVKDPSLA DNYQDSAASVGVSINQYGMFEINNKDNKNTIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNTASLIEGGAPASSSKFTHA THATSIDVIDSLGTKHTMRIEFYRSGGAEWNFRVIVPEPAELVGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKN GADAPQRINLAFGSSGSFDGLTSVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGL QALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLKQ >Mature_718_residues MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVGLGVGVDATTKI FSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSLVTTGGLVVQGWVRNGNDTGNKGSDTDALKVD NTGPLENIRIDPGMVMPARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSDGINPVYDSSTNLAQVAEDMGSLYNED GDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQL RLENTNELDGDEKLKNIVVTQAGTGAFANFLDGDKDVTAFKYSYTHSISPNANSGQFRTTEDLRALIQHDANIVKDPSLA DNYQDSAASVGVSINQYGMFEINNKDNKNTIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNTASLIEGGAPASSSKFTHA THATSIDVIDSLGTKHTMRIEFYRSGGAEWNFRVIVPEPAELVGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKN GADAPQRINLAFGSSGSFDGLTSVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGL QALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLKQ
Specific function: Unknown
COG id: COG1749
COG function: function code N; Flagellar hook protein FlgE
Gene ontology:
Cell location: Bacterial flagellum basal body [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the flagella basal body rod proteins family [H]
Homologues:
Organism=Escherichia coli, GI1787316, Length=261, Percent_Identity=35.632183908046, Blast_Score=142, Evalue=6e-35, Organism=Escherichia coli, GI1787318, Length=139, Percent_Identity=41.0071942446043, Blast_Score=97, Evalue=3e-21,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010930 - InterPro: IPR011491 - InterPro: IPR001444 - InterPro: IPR020013 - InterPro: IPR010810 - InterPro: IPR012835 [H]
Pfam domain/function: PF06429 DUF1078; PF07559 FlaE; PF07196 Flagellin_IN; PF00460 Flg_bb_rod [H]
EC number: NA
Molecular weight: Translated: 76353; Mature: 76353
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL CCHHHHCCCCCCEEEEEEEEECCCCEEEEECCCCEEHHHHHHHHHHHEEEEEECCCCCCC AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGE CCCCCCEEEEECCCCHHHHHHCCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCC FLFDSQGSLVTTGGLVVQGWVRNGNDTGNKGSDTDALKVDNTGPLENIRIDPGMVMPARA EEEECCCCEEEECCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCEEEECCCEEECCCC SNRISMRANLNAGRHADQTAAIFALDSSAKTPSDGINPVYDSSTNLAQVAEDMGSLYNED CCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC GDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVSRTSSLVAAKN CCEEEEECCCCEEEEECHHHHHHHHCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHH AINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANFLDGDKDVTAF HHHHHHHCCCCEEEECCCEEEECCCCCCCCHHHHHEEEEEECCCCHHHHHCCCCCCEEEE KYSYTHSISPNANSGQFRTTEDLRALIQHDANIVKDPSLADNYQDSAASVGVSINQYGMF EEEEEEECCCCCCCCCEECHHHHHHHHHCCCCEECCCCCCCCCCCCHHHCCEEECCEEEE EINNKDNKNTIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNTASLIEGGAPASSSKFTHA EECCCCCCHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEE THATSIDVIDSLGTKHTMRIEFYRSGGAEWNFRVIVPEPAELVGGSAARPNVFEGGRLHF CCCCCHHHHHCCCCCEEEEEEEEECCCCCEEEEEECCCCHHHCCCCCCCCCCCCCCEEEE NNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLTSVDKISETYAIEQNGYQA CCCCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHEEEECCCCCC GDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQALGGNVFSQTGNSGQALIG CCEEEEEECCCCEEEEECCCCCEEEHHHHHHHHCCCCCCHHHHCCCHHCCCCCCCCEEEE AANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLKQ ECCCCCCCCCCCCCCCCCCCCHHHHHHEEEEEECCCCCCCCEEECHHHHHHHHHHCCC >Mature Secondary Structure MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL CCHHHHCCCCCCEEEEEEEEECCCCEEEEECCCCEEHHHHHHHHHHHEEEEEECCCCCCC AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGE CCCCCCEEEEECCCCHHHHHHCCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCC FLFDSQGSLVTTGGLVVQGWVRNGNDTGNKGSDTDALKVDNTGPLENIRIDPGMVMPARA EEEECCCCEEEECCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCEEEECCCEEECCCC SNRISMRANLNAGRHADQTAAIFALDSSAKTPSDGINPVYDSSTNLAQVAEDMGSLYNED CCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC GDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVSRTSSLVAAKN CCEEEEECCCCEEEEECHHHHHHHHCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHH AINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANFLDGDKDVTAF HHHHHHHCCCCEEEECCCEEEECCCCCCCCHHHHHEEEEEECCCCHHHHHCCCCCCEEEE KYSYTHSISPNANSGQFRTTEDLRALIQHDANIVKDPSLADNYQDSAASVGVSINQYGMF EEEEEEECCCCCCCCCEECHHHHHHHHHCCCCEECCCCCCCCCCCCHHHCCEEECCEEEE EINNKDNKNTIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNTASLIEGGAPASSSKFTHA EECCCCCCHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEE THATSIDVIDSLGTKHTMRIEFYRSGGAEWNFRVIVPEPAELVGGSAARPNVFEGGRLHF CCCCCHHHHHCCCCCEEEEEEEEECCCCCEEEEEECCCCHHHCCCCCCCCCCCCCCEEEE NNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLTSVDKISETYAIEQNGYQA CCCCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHEEEECCCCCC GDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQALGGNVFSQTGNSGQALIG CCEEEEEECCCCEEEEECCCCCEEEHHHHHHHHCCCCCCHHHHCCCHHCCCCCCCCEEEE AANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLKQ ECCCCCCCCCCCCCCCCCCCCHHHHHHEEEEEECCCCCCCCEEECHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]