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The map label for this gene is hypA [H]

Identifier: 109947757

GI number: 109947757

Start: 1066030

End: 1066383

Strand: Reverse

Name: hypA [H]

Synonym: Hac_1232

Alternate gene names: 109947757

Gene position: 1066383-1066030 (Counterclockwise)

Preceding gene: 109947758

Following gene: 109947756

Centisome position: 68.63

GC content: 40.11

Gene sequence:

>354_bases
ATGCATGAATACTCGGTCGTTTCTTCTTTAATCGCTCTTTGCGAAGAGCATGCGAAGAAAAATCAAGCCCATAAGATTGA
AAGAGTCGTGGTCGGTATTGGCGAAAGAAGTGCCATGGATAAGAGCTTGTTTGTGAGCGCGTTTGAGACTTTTAGAGAAG
AATCTTTGGTATGTAAAGACGCTGTTTTAGACATTGTGGATGAAAAGGTTGAGTTAGAATGCAAGGATTGTTCGCATGTT
TTTAAGCCTAACGCTTTGGATTATGGGGTGTGTGAAAAATGCCACAGCAAAAATGTAGTCATCACTCAAGGCAATGAAAT
GCGTTTGTTGTCTTTGGAAATGTTAGCGGAATAA

Upstream 100 bases:

>100_bases
CGATCAAATCCTTAACACTTTGTTAAACCTTAAGCAATAAGGATCAAAAATTACTCTAATACAATATAATGGAGGCATAT
TTTAAAGATTAAGGTTTAGT

Downstream 100 bases:

>100_bases
GATTGATGCAAGAAGCCGAGTTGAACGCCTACCAGCAAGAAATTAAAGACACTAGAGAAGTTTTAAAAAAAATCCGTTTG
GAATTGAAACAAGTCCAAGA

Product: hydrogenase nickel incorporation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MHEYSVVSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETFREESLVCKDAVLDIVDEKVELECKDCSHV
FKPNALDYGVCEKCHSKNVVITQGNEMRLLSLEMLAE

Sequences:

>Translated_117_residues
MHEYSVVSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETFREESLVCKDAVLDIVDEKVELECKDCSHV
FKPNALDYGVCEKCHSKNVVITQGNEMRLLSLEMLAE
>Mature_117_residues
MHEYSVVSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETFREESLVCKDAVLDIVDEKVELECKDCSHV
FKPNALDYGVCEKCHSKNVVITQGNEMRLLSLEMLAE

Specific function: Plays a role in both the hydrogenase and the urease nickel cofactor insertion step [H]

COG id: COG0375

COG function: function code R; Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypA/hybF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000688
- InterPro:   IPR020538 [H]

Pfam domain/function: PF01155 HypA [H]

EC number: NA

Molecular weight: Translated: 13174; Mature: 13174

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS01249 HYPA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
8.5 %Cys+Met (Translated Protein)
5.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
8.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEYSVVSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETFREESLVCKD
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AVLDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKNVVITQGNEMRLLSLEMLAE
HHHHHHHHHHEEEECCHHHHCCCCCCCHHHHHHHCCCCEEEECCCCEEEEHHHHHCC
>Mature Secondary Structure
MHEYSVVSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETFREESLVCKD
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AVLDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKNVVITQGNEMRLLSLEMLAE
HHHHHHHHHHEEEECCHHHHCCCCCCCHHHHHHHCCCCEEEECCCCEEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]